Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04110 ATGCAGAAGATGCAGAGGCCTCCACCAGAAGATTTTCTCTTGAAGGAGACCAAACCCCACCTTGGAGGGGGTAAGGTCTCTGGAGATAAGCTTACTAGCACCTATGACCTTGTTGAGCAAATGCAATACCTTTATGTAAGGGTTGTGAAGGCTAAGGACTTACCTGCAAAGGATGTCACTGGTAGTTGTGACCCTTATGTTGAAGTCAAGCTGGGAAACTACAAAGGCACCACTAGGCACTTTGAGAAGAAGACTAATCCTGAATGGAGCCAGGTTTTTGCTTTCTCGAAAGACCGGATTCAGGCTTCTGCGCTGGAAGTTACTGTGAAAGATAAGGATGTTGTGAAGGATGACTTCATTGGCTGTGTTTGGTTTGATCTCAATGAGATCCCGAAAAGGGTTCCCCCGGATAGCCCTCTGGCACCGCAGTGGTATAGACTGGAGGACAAAAAGGGTGATAAGGCTAAAGGGGAGCTAATGCTGGCTGTTTGGATGGGTACACAAGCTGATGAAGCATTTCCTGAAGCGTGGCACTCAGATGCGGCAACAGTTAGTGGGAGTGATGCTCTTGCTAACATTAGATCAAAGGTGTATCTATCTCCTAAGCTTTGGTATTTGAGGGTTAATGTGATAGAGGCACAAGACTTGCAGCTAACTGACAAGGGAAGATACCCAGAGGTTTTTGTGAAGGCTACTTTGGGAAATCAGACCTTGAGGACTAGAATCTCTCAGAGCAGAAGTATCAATCCAATGTGGAATGAGGATTTGATGTTTGTGGCTGCTGAACCATTTGAGGAGCCCCTGATTTTGAGTGTGGAAGATAGAGTTGCACCTAACAAAGATGAACTACTTGGGAGGTGTTTTATTCCTCTACCGATGGTGGACAGGAGACTAGATCAAAAACCTGTGAACACTAGGTGGTTTAATATTGAAAAGCATGTTGTTATTATGGAAGGGGAAAAGAAGAAGGAAATCAAGTTTGCAAGCAGGATTCATATGAGGATCTGTCTTGAAGGTGGTTATCATGTTTTGGATGAATCAACTCACTATAGCAGTGATCTTCGTCCAACAGCAAAACAGCTGTGGAAGTCCAGTATTGGAGTTCTTGAAGTGGGGATACTGAATGCTCAGGGTTTGATGCCAATGAAAACAAAAGATGGGAGGGGGACAACAGATGCTTATTGTGTAGCAAAATATGGGCAAAAATGGGTGAGGACAAGGACCATCATTGATAGCTTTACACCTAGGTGGAATGAGCAATATACTTGGGAGGTTTTTGATCCTTGCACTGTCATCACCATTGGTGTATTTGATAACTGCCATTTACATGGTGGTGATAAGGGTGGAGGGGCAAAAGATGCAAGAATTGGGAAGGTACGAATTCGTCTTTCCACCCTTGAGACGGATCGAGTTTATACGCATTCCTATCCACTTCTAGTTCTTCACCAAAATGGGGTGAAGAAAATGGGTGAAATTCACTTGGCTGTAAGGTTTACTTGTTCTTCTTTGCTTAACATGATGCACATGTATTCACAACCCTTGTTGCCTAAGATGCATTACATTCATCCATTGACTGTAAGCCAGCTTGACAGTTTGAGGCATCAAGCCACTCAGATTGTTTCAATGAGACTGAGTCGTGCGGAGCCACCACTGAGAAAGGAGGTTGTGGAGTATATGCTTGATGTCGGTTCCCACATGTGGAGTATGAGAAGAAGCAAGGCCAACTTTTTCAGGATTATGGGAGTTTTGGGTGGATTAATTGCTGTAGGAAAATGGTTTGATCAGATTTGCAATTGGAAAAACCCCATCACAACAGTTCTGATCCATATCTTGTTTATAATATTGGTCATGTACCCTGAGCTTATTTTACCCACAATATTCCTTTACCTCTTCTTGATTGGAGTATGGTACTATAGATGGAGGCCAAGGCACCCTCCTCACATGGACACCAGGCTATCTCATGCAGATTCTGCACACCCTGATGAACTTGATGAAGAATTTGACACATTCCCAACTACTAGGCCTTCTGACATTGTGAGGATGAGATATGATAGACTTAGAAGTATTGCTGGGAGGATACAAACTGTGGTTGGTGATTTGGCCACTCAAGGGGAAAGGCTTCAATCTTTGCTTAGCTGGAGAGATCCAAGAGCTACTGCACTCTTTGTGATTTTCTGTTTGGTTGCTGCCATTGTACTTTATGTCACTCCATTCCAAGTTGTGGCTCTTCTGACTGGAATTTATGTACTGAGACATCCAAGGTTCCGTCACAAGCTTCCTTCAGTGCCACTGAATTTCTTCAGGAGGCTGCCTGCAAGAACTGATTGCATGCTTTGA 2337 0.4382 MQKMQRPPPEDFLLKETKPHLGGGKVSGDKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDPYVEVKLGNYKGTTRHFEKKTNPEWSQVFAFSKDRIQASALEVTVKDKDVVKDDFIGCVWFDLNEIPKRVPPDSPLAPQWYRLEDKKGDKAKGELMLAVWMGTQADEAFPEAWHSDAATVSGSDALANIRSKVYLSPKLWYLRVNVIEAQDLQLTDKGRYPEVFVKATLGNQTLRTRISQSRSINPMWNEDLMFVAAEPFEEPLILSVEDRVAPNKDELLGRCFIPLPMVDRRLDQKPVNTRWFNIEKHVVIMEGEKKKEIKFASRIHMRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLEVGILNAQGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSFTPRWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKGGGAKDARIGKVRIRLSTLETDRVYTHSYPLLVLHQNGVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLGGLIAVGKWFDQICNWKNPITTVLIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTTRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLVAAIVLYVTPFQVVALLTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML. 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04110 778 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 43 181 IPR035892 -
Seca2g04110 778 SMART C2_3c 368 475 IPR000008 -
Seca2g04110 778 SMART C2_3c 43 139 IPR000008 -
Seca2g04110 778 SMART C2_3c 205 303 IPR000008 -
Seca2g04110 778 Gene3D C2 domain 191 336 IPR035892 -
Seca2g04110 778 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 5 778 IPR047259 -
Seca2g04110 778 FunFam C2 domain-containing protein 191 337 - -
Seca2g04110 778 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 204 358 IPR035892 -
Seca2g04110 778 ProSiteProfiles C2 domain profile. 350 476 IPR000008 -
Seca2g04110 778 ProSiteProfiles C2 domain profile. 25 145 IPR000008 -
Seca2g04110 778 MobiDBLite consensus disorder prediction 1 26 - -
Seca2g04110 778 FunFam C2 domain-containing protein 350 502 - -
Seca2g04110 778 Pfam Plant phosphoribosyltransferase C-terminal 623 778 IPR013583 -
Seca2g04110 778 Gene3D C2 domain 344 500 IPR035892 -
Seca2g04110 778 ProSiteProfiles C2 domain profile. 184 308 IPR000008 -
Seca2g04110 778 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 367 507 IPR035892 -
Seca2g04110 778 CDD C2B_MCTP_PRT_plant 43 167 IPR047257 -
Seca2g04110 778 CDD C2C_MCTP_PRT_plant 205 356 IPR047258 -
Seca2g04110 778 FunFam C2 domain-containing protein 38 182 - -
Seca2g04110 778 Pfam C2 domain 204 310 IPR000008 -
Seca2g04110 778 Pfam C2 domain 43 136 IPR000008 -
Seca2g04110 778 Pfam C2 domain 367 478 IPR000008 -
Seca2g04110 778 Gene3D C2 domain 42 164 IPR035892 -
Seca2g04110 778 CDD C2D_MCTP_PRT_plant 368 495 IPR047255 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04110 Seca-Chr2 124132217 124135969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04110 4 778 Lipid Metabolism Gene Families AT3G57880 90.581 0.0 1479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04110 - - gmx:100818371 1505.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04110 2 124132217 124135969 Seca4g09945 4 232370761 232374180 ECH
Seca2g04110 2 124132217 124135969 Seca2g04110 2 124132217 124135969 ECH
Seca8g04924 8 136426071 136429468 Seca2g04110 2 124132217 124135969 PCT