Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04109 ATGGCTGCTTCCAATAGTACTCTCAAGAACACCAACCAATCAATCAGTAAAATGAAACCAGTCCCACTCCCACCACCACCACCACCACCATCACCACCACCCCCACCACCCCCACCACCACCATCACATCTCTTTCATAATGACCAACACCACACCTTTCATCAGTTACAGAACAACAACAATAACCAAATTTCTTTCGGAATGATGCAATCTCCTCCACCATCAGCTCTTATTCCTGGAAACTACCAGCTAAACAAGAATTTTGGTGAATTGGATCAATCCGTTCTCCACTATTTTACTGGATCACAAGCAGACCTCTCGAGTGTTCAAGACCAAAGACAAAACTCAGCAACACCATTGATGAGGCGTTCAACTCTCAACATTTTCCCTTCTCAGCCAATGCATACAGTGCCAACATTAACCAATTCCAAGGGTAAAATGGAGTTAGTTTCCCTGCAAGCTGGTGGATCCAAGGCACCATCCAACCCACCCGTGGAGTTGACCAAGCCAAAAAGCAATGCAGTACCTGTTTCTTCCTTTGAACCACCCAAAGCTCCTCAGCCATTGCAACCGAATAACAAAAACAAGGGTTCAACGTCAGGAGGTGTTAGAATAGAAGATAAGACCATGAGGAGGCTTGCTCAGAATAGAGAGGCAGCTAGGAAGAGCAGGCAGAGAAAAAAGGCTTATATTCAGCAGCTGGAGTCTAGTAGGGTTAGGCTCGTTCAACTGGAACAAGAAGTACAGCGTCTTAGGGCTCAAGTCATATACTTGGGTGGAAATGCAGCTTTGGGAGGAGAGCAAGGCCTTCCTGTCCCTACCATGAATAATAGCTCTGGCCCAGAGGTTACTGCTGCGTTTGATATGGAATATGCTAGATGGGTAGAGGAACACCAACGCCGAGTTGGGGAGTTAAGAACTGCATTCCATAATCGCGTTCCTGATCATGAGCTGAGAATGTTTGTTGACAATTGCTTGGCACATTTTGACCAAGTGATGAATCTAAAGAGCTTGGTGATCAAAGCAGACATGTTCTATATTCTTTCCGGCATGTGGAAGACGCCAGCAGAAAGATCCTCCATATGGATTGGTGGATTCAAGCCTTCTGAAATCTTTAAGATTGTTTTGACTCAAATTGAGCCTCTGTCTGACCAACAAGTCCTGGCTATATGTGCATTGCAACAAACTACACATGAGGCAGAAGATGCTATCACTCTAGAGGTTGTTAATCTCAATCAAGCTATCTTAGGGAGTTTATCATCAGGCACTTTAACCCATACTCCCAATATGAATAACTACATGTCACATATGGCCATCGCCATGACCAAGCTCTCCGGTCTTGAAAATGTTGTGAGACAGGCAGAGACTCTGAGGCATCAAACAATTCACCGTCTGCATCAGATCCTAACAACTCGTCAAGCAGCAAGGTATTTTATGTCGATTGCTGAGTACTACCATCGTATGCGAGCGCTGAGTTCTCTGTGGTTGGCACGCACTCGCCAAGAGTAG 1509 0.4533 MAASNSTLKNTNQSISKMKPVPLPPPPPPPSPPPPPPPPPPSHLFHNDQHHTFHQLQNNNNNQISFGMMQSPPPSALIPGNYQLNKNFGELDQSVLHYFTGSQADLSSVQDQRQNSATPLMRRSTLNIFPSQPMHTVPTLTNSKGKMELVSLQAGGSKAPSNPPVELTKPKSNAVPVSSFEPPKAPQPLQPNNKNKGSTSGGVRIEDKTMRRLAQNREAARKSRQRKKAYIQQLESSRVRLVQLEQEVQRLRAQVIYLGGNAALGGEQGLPVPTMNNSSGPEVTAAFDMEYARWVEEHQRRVGELRTAFHNRVPDHELRMFVDNCLAHFDQVMNLKSLVIKADMFYILSGMWKTPAERSSIWIGGFKPSEIFKIVLTQIEPLSDQQVLAICALQQTTHEAEDAITLEVVNLNQAILGSLSSGTLTHTPNMNNYMSHMAIAMTKLSGLENVVRQAETLRHQTIHRLHQILTTRQAARYFMSIAEYYHRMRALSSLWLARTRQE. 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04109 502 Pfam Basic region leucine zipper 206 255 IPR004827 GO:0003700|GO:0006355
Seca2g04109 502 MobiDBLite consensus disorder prediction 19 44 - -
Seca2g04109 502 SUPERFAMILY Leucine zipper domain 208 257 IPR046347 GO:0003700|GO:0006355
Seca2g04109 502 CDD bZIP_HBP1b-like 208 260 - -
Seca2g04109 502 SMART brlzneu 204 264 IPR004827 GO:0003700|GO:0006355
Seca2g04109 502 MobiDBLite consensus disorder prediction 1 47 - -
Seca2g04109 502 MobiDBLite consensus disorder prediction 152 226 - -
Seca2g04109 502 Gene3D - 207 260 - -
Seca2g04109 502 Pfam Seed dormancy control 302 376 IPR025422 GO:0006351|GO:0043565
Seca2g04109 502 Coils Coil 227 254 - -
Seca2g04109 502 FunFam BZIP family transcription factor 207 256 - -
Seca2g04109 502 PANTHER TRANSCRIPTION FACTOR TGA9 126 501 - -
Seca2g04109 502 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 211 226 IPR004827 GO:0003700|GO:0006355
Seca2g04109 502 MobiDBLite consensus disorder prediction 205 220 - -
Seca2g04109 502 MobiDBLite consensus disorder prediction 1 18 - -
Seca2g04109 502 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 206 250 IPR004827 GO:0003700|GO:0006355
Seca2g04109 502 ProSiteProfiles DOG1 domain profile. 284 498 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04109 Seca-Chr2 123998990 124005140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04109 80 502 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 48.132 5.28e-132 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca2g04109 DOG1 3.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04109 K14431 - gmx:100799713 522.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04920 8 136376671 136383409 Seca2g04109 2 123998990 124005140 PCT