Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04101 ATGGCGTATGCTGCGATGAAGCCTGTTAAGCCTGGTTTGGAGGAGTCCCAGGAGCAGATCCACAAGATCAGAATCACCCTTTCCTCCAAACACGTCAAAAATCTCGAGAAGGTTTGTTCGGACTTGATTCGTGGAGCCAAGGACAAGAGGCTTAGGGTCAAGGGACCCGTCAGGATGCCCACCAAAGTTCTTCACATCACTACAAGGAAGTCCCCTTGTGGAGAAGGTAACTTTCACTCTCTAATCATTTCTTATAGTACCAACACATGGGACAGATTTGAACTTCGTGTGCACAAGAGAGTAATTGACCTTTACAGTTCCCCAGATGTGGTTAAGCAGATTACATCAATCACCATTGAACCTGGTGTGGAGGTTGAGGTTACCATTGCCGATGCTTGA 399 0.4687 MAYAAMKPVKPGLEESQEQIHKIRITLSSKHVKNLEKVCSDLIRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGNFHSLIISYSTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIADA. 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04101 132 SMART Ribosomal_S10_2 24 128 IPR027486 -
Seca2g04101 132 SUPERFAMILY Ribosomal protein S10 22 129 IPR036838 -
Seca2g04101 132 FunFam 40S ribosomal protein S20 7 131 - -
Seca2g04101 132 Pfam Ribosomal protein S10p/S20e 24 128 IPR027486 -
Seca2g04101 132 Gene3D Ribosomal protein S10 domain 8 131 IPR036838 -
Seca2g04101 132 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 9 131 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca2g04101 132 NCBIfam 30S ribosomal protein S10 21 129 IPR005729 GO:0003735|GO:0006412|GO:0015935
Seca2g04101 132 ProSitePatterns Ribosomal protein S10 signature. 46 61 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Seca2g04101 132 Hamap 30S ribosomal protein S10 [rpsJ]. 20 129 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca2g04101 132 PRINTS Ribosomal protein S10 family signature 89 103 IPR001848 GO:0003735|GO:0005840|GO:0006412
Seca2g04101 132 PRINTS Ribosomal protein S10 family signature 22 35 IPR001848 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04101 Seca-Chr2 123835915 123838040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04101 1 132 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 81.818 2.09e-74 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04101 K02969 - gmx:100817306 230.335