Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04093 ATGGAGCAAGCTACGTTAGGGTTACGTGGATCCATTCACGACCGCACCGTACTTGAGTCCATTCAATTCAACGAAGAAATCCAGGGAATCGTGGCGCCGGCGCCGGCGCCGGAAAACGCCAGTTCGTTCACCGCGCTGCTTGAGCTCCCGCCGACTCAGGCGGTTGAGCTCCTTCACTCGCCGGATTGCGACGGAGCCGCTGCTCGGAGACCGCCTTCTTGCCACGTCAGCGTGAATCAGAAATCCTATCTGCTCAACTCTTTCAGTGGTAATTTGACGTTTCCTACCAACGCCGCCTTGATCGAACGCGCCGCGAAGTTCTCCGTGTTCGCCGGAGAGAACTCACCGCCGGGAGAGGCTCAACTGGTTCCGGCCGGGACCGGTGCAAATTTGGATAGGGTGAAGAACGAGCCGCAAGAGACCGATTCGAACCCTTGCTCTACGCAGGGGTGCGTTTCGGTTTCGGATCCCGCGGTTGAGAACAAGAATCAGAGGAGCACAAAGAGAAAGGAGCGAGAGAAGAAGGGCAGAGTGTCCACGAAGAAGAGTAAGAGCGTCGCCGATGAGAACTCCGGAGACGGCGAGAAGCTTCCCTACGTCCATGTTCGCGTTCGTCGAGGTCAAGCCACAGATAGCCATAGCTTGGCAGAGAGGGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCCGGCTGTGACAAGATATCTGGAACAGCATTGGTTCTGGATGAAATAATCAACCATGTGCAATCTCTACAACGTCAAGTGGAGATCTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAGCTTAGACAGTTTACTTACTACTGATGGGCCATCTCTAATGGACAGTAACTTACCTAGCATGGTGACCCCTCTCATGTGGCCAGAAATCCCACTCAATGGTAACAGACAGCATTATCAACAACAGTGGCAATTTGATGCATTCCACCAACCACTTTGGGGGAGGGAAGAAGATAACCATAATTTCATGACTCCGGAAAACTCACTTTTGAGTTATGACTCATCGGCAAATTCAGCATCTCTGCACTCAAACCAATTGAAGATGGAGCTCTGA 1107 0.5176 MEQATLGLRGSIHDRTVLESIQFNEEIQGIVAPAPAPENASSFTALLELPPTQAVELLHSPDCDGAAARRPPSCHVSVNQKSYLLNSFSGNLTFPTNAALIERAAKFSVFAGENSPPGEAQLVPAGTGANLDRVKNEPQETDSNPCSTQGCVSVSDPAVENKNQRSTKRKEREKKGRVSTKKSKSVADENSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTALVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDSLLTTDGPSLMDSNLPSMVTPLMWPEIPLNGNRQHYQQQWQFDAFHQPLWGREEDNHNFMTPENSLLSYDSSANSASLHSNQLKMEL. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04093 368 Coils Coil 248 268 - -
Seca2g04093 368 CDD bHLH_AtBPE_like 198 283 - -
Seca2g04093 368 Gene3D - 205 277 IPR036638 GO:0046983
Seca2g04093 368 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 208 258 IPR011598 GO:0046983
Seca2g04093 368 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 117 352 IPR024097 GO:0006355
Seca2g04093 368 FunFam transcription factor bHLH48-like isoform X1 205 277 - -
Seca2g04093 368 MobiDBLite consensus disorder prediction 140 161 - -
Seca2g04093 368 MobiDBLite consensus disorder prediction 178 195 - -
Seca2g04093 368 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 277 IPR036638 GO:0046983
Seca2g04093 368 SMART finulus 214 264 IPR011598 GO:0046983
Seca2g04093 368 MobiDBLite consensus disorder prediction 130 195 - -
Seca2g04093 368 Pfam Helix-loop-helix DNA-binding domain 212 259 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04093 Seca-Chr2 123640353 123647347 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04093 18 368 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 52.727 1.08e-107 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca2g04093 HLH 1.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04093 - - vun:114168708 631.328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04093 2 123640353 123647347 Seca2g04093 2 123640353 123647347 ECH