Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04087 ATGGCTACTACATTCTGTATATACCTACTATTGCTTCTCTCTGTGACCTTTCCAATCTTCAACCTTTGTTCATCTTCATCAGAAGGGGATATCCTTCTCTCCTTCAAGGCCTCCATTGAAGACTCTAAGAAGGCCTTATCTATCTGGTCAAATACTTCATCAACTCACTACTGTAACTGGACTGGAATTGCTTGCTCCACCACACCTTCACTCTCAGTTACTTCTATTGATCTTCAGAGTTTGAACCTTTCTGGGGATATCTCATCTTCTATATGTGACCTTCCAAATCTGTCTTATCTCAACCTTGCTGATAATATCTTCAACCAGCCCATTCCTCTTCATCTTGCTCAGTGTAGTTCATTGGAAACTTTGAATCTCAGTGACAATCTTATATGGGGCACTATCCCATCTCAGATTTCTCAGTTTGCTTCCTTGAAAGTGCTTGATTTAAGCAGAAATCATATAGAGGGAATTATCCCAGAAAGCTTTGGTTCTTTGAAGAACCTCCAAGTTCTTAACTTGGGAAGTAACTTGCTATCAGGTGATGTACCAGCTGTGTTTGGAAATTTAACTGAGCTTGAAGTACTTGATTTGTCTCAGAATCCATACTTGGTGAGTGAGATTCCAGAGGATATTGGTGAACTTGGAAATCTAAAGCAACTTCTGCTGCAAAGCTCTTCTTTTCAAGGTGAAATTCCAAAGTCCTTGGAGGGTTTGCATAGTTTGACACATTTAGATCTCTCTGAGAACAATCTAACAGGTGGGGTTCCTCAGTCTCTTGCATCTTCTCTCAAGAACCTGGTTTCTTTTGATGTCTCACAAAACAAGCTTTTGGGGCCATTTCCAAATGGCATGTGTAAAGGACAAGGCCTTATAAATCTCAGCCTCCATACGAATACCTTCACTGGTTCAGTACCCAACTCCATTAGTGAATGTAAGAGTCTTGAGAGATTCCAAGTTCAGAACAATGGTTTCTCTGGAGATTTTCCCATTGCATTATGGTCACTACCCAAAATTAAGCTCATTAGAGCTGAAAACAATAGATTCTCAGGACAAATACCTGAGTCAGTATCAGGAGCTGTTCAGTTGGAGCAAGTTCAGCTTGACAATAACAGCTTTGTTGGTAAAATTCCTCAAGGCCTTGGCTTTGTCAAGAGCTTATACAGATTCTCTGCTTCCCTCAATGGTTTCTATGGTGAACTTCCTCCAAATTTTTGTGACTCCCCTGTTATGAGCATAGTTAATCTCTCTCACAATTCTCTTTCTGGACAAATCCCAGAACTGAAAAAATGCAGGAAACTAGTTTCATTGTCTTTGGCTGACAACAGTCTAATAGGAGAAATTCCCCCTTCTCTTGCTGAGCTACCTGTGCTGACTTACCTTGATCTTTCAGATAACAATCTCACTGGTTCAATCCCACAAGGGCTTCAAAACTTAAAGCTTGCTCTTTTCAATGTGTCCTTCAATCAGCTATCAGGTAAAGTACCATACTCCTTGATTTCTGGTCTACCAGCCTCATTTTTGGAAGGAAACCCTGGTCTTTGTGGCCCTGGATTGCCCAACTCATGTTCTGATGATGACATGCCAAGACACCATAGTGGTGGTCTTACAACCTTAACATGTGCACTCATCTCTTTAGCCTTTGTTGCTGGAACTGCTATTGTTGCTGGTGGATTTATATTGTATAGGAGATCTTGCAAGGAGAATCAAGTAGGTGTTTGGCGTTCAGTGTTCTTTTATCCTCTCAGAATTACTGAGCATGATCTTCTTATAGGGATGAATGAGAAAAGCTCAATGGGAAAAGGTGGAGTTTTTGGCAAAGTTTATGCTGTGAGTTTACCTAGTGGTGAACTAGTATCTGTGAAGAAGCTAGTTAATTTTGGAAACCAGTCCTCAAAAAGTTTGAAAGCTGAGGTCAAGACTTTGGCAAAAATTAGGCATAAGAATGTTGTTAAAATTCTGGGGTTCTGCCATTCTGATGAGTCAGTTTTTCTTATATATGAATACTTGCATGGAGGAAGCTTAGGGGATTTGATTTCCAGTCAGAATTTTCAGTTGCCTTGGGGGGTTAGATTAAGGATTGCCATTGGAGTTGCTCAAGGACTGGCATATCTTCACAAGGATTATGTCCCACACTTGCTTCACAGAAATGTCAAGTCAAAGAACATTCTGTTGGATGCAAATTTTGAGCCAAAACTGACAGATTTTGCTCTTGATAGAATTGTGGGAGAAGCTGCATTTCAATCAACCTTGGATTCTGAAGCAGCATCTTCCTGTTATATTGCACCAGAATATGGTTACAGTAAAAAAGCAACTGAAGAATTGGACATCTATAGCTTTGGTGTTGTATTGCTAGAGCTAGTGAGTGGGAGGCAAGCAGAGGCAACAGAGTCAAGTGACTCCCTTGACATTGTGAAGTGGGTTAGAAGGAAAGTGAACATCACTAATGGGGTACAACAAGTTCTTGACCCTAGAATATCAAATACTTGCCACCAAGAAATGATTGGAGCATTAGATATTGCTCTTCGTTGCACTTCTGTGGTACCTGAGAAAAGGCCATCAATGGTACAAGTTGTTAGAGGTCTTCAGTCCCTTGAGTCAAGAACTTGCATTGCAAATTTGCAGGATCCAAATGAGGAACCATCCATTCCAGTTTGA 2658 0.4059 MATTFCIYLLLLLSVTFPIFNLCSSSSEGDILLSFKASIEDSKKALSIWSNTSSTHYCNWTGIACSTTPSLSVTSIDLQSLNLSGDISSSICDLPNLSYLNLADNIFNQPIPLHLAQCSSLETLNLSDNLIWGTIPSQISQFASLKVLDLSRNHIEGIIPESFGSLKNLQVLNLGSNLLSGDVPAVFGNLTELEVLDLSQNPYLVSEIPEDIGELGNLKQLLLQSSSFQGEIPKSLEGLHSLTHLDLSENNLTGGVPQSLASSLKNLVSFDVSQNKLLGPFPNGMCKGQGLINLSLHTNTFTGSVPNSISECKSLERFQVQNNGFSGDFPIALWSLPKIKLIRAENNRFSGQIPESVSGAVQLEQVQLDNNSFVGKIPQGLGFVKSLYRFSASLNGFYGELPPNFCDSPVMSIVNLSHNSLSGQIPELKKCRKLVSLSLADNSLIGEIPPSLAELPVLTYLDLSDNNLTGSIPQGLQNLKLALFNVSFNQLSGKVPYSLISGLPASFLEGNPGLCGPGLPNSCSDDDMPRHHSGGLTTLTCALISLAFVAGTAIVAGGFILYRRSCKENQVGVWRSVFFYPLRITEHDLLIGMNEKSSMGKGGVFGKVYAVSLPSGELVSVKKLVNFGNQSSKSLKAEVKTLAKIRHKNVVKILGFCHSDESVFLIYEYLHGGSLGDLISSQNFQLPWGVRLRIAIGVAQGLAYLHKDYVPHLLHRNVKSKNILLDANFEPKLTDFALDRIVGEAAFQSTLDSEAASSCYIAPEYGYSKKATEELDIYSFGVVLLELVSGRQAEATESSDSLDIVKWVRRKVNITNGVQQVLDPRISNTCHQEMIGALDIALRCTSVVPEKRPSMVQVVRGLQSLESRTCIANLQDPNEEPSIPV. 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04087 885 SUPERFAMILY Protein kinase-like (PK-like) 602 861 IPR011009 -
Seca2g04087 885 ProSiteProfiles Protein kinase domain profile. 594 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04087 885 FunFam - 588 669 - -
Seca2g04087 885 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 9 864 - -
Seca2g04087 885 SUPERFAMILY L domain-like 206 519 - -
Seca2g04087 885 CDD STKc_IRAK 599 865 - -
Seca2g04087 885 ProSiteProfiles Leucine-rich repeat profile. 144 165 IPR001611 GO:0005515
Seca2g04087 885 Gene3D Transferase(Phosphotransferase) domain 1 670 879 - -
Seca2g04087 885 FunFam Leucine-rich repeat family protein 27 184 - -
Seca2g04087 885 PRINTS Leucine-rich repeat signature 242 255 - -
Seca2g04087 885 PRINTS Leucine-rich repeat signature 455 468 - -
Seca2g04087 885 Gene3D Ribonuclease Inhibitor 241 526 IPR032675 -
Seca2g04087 885 Gene3D Phosphorylase Kinase; domain 1 588 669 - -
Seca2g04087 885 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At5g06940 262 526 - -
Seca2g04087 885 Gene3D Ribonuclease Inhibitor 184 238 IPR032675 -
Seca2g04087 885 Gene3D Ribonuclease Inhibitor 25 183 IPR032675 -
Seca2g04087 885 SUPERFAMILY L domain-like 26 303 - -
Seca2g04087 885 SMART LRR_typ_2 239 262 IPR003591 -
Seca2g04087 885 SMART LRR_typ_2 264 288 IPR003591 -
Seca2g04087 885 SMART LRR_typ_2 166 189 IPR003591 -
Seca2g04087 885 SMART LRR_typ_2 142 165 IPR003591 -
Seca2g04087 885 SMART LRR_typ_2 455 478 IPR003591 -
Seca2g04087 885 SMART LRR_typ_2 190 215 IPR003591 -
Seca2g04087 885 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Seca2g04087 885 ProSiteProfiles Leucine-rich repeat profile. 457 480 IPR001611 GO:0005515
Seca2g04087 885 Pfam Leucine rich repeat 144 202 IPR001611 GO:0005515
Seca2g04087 885 Pfam Leucine rich repeat 432 491 IPR001611 GO:0005515
Seca2g04087 885 Pfam Leucine rich repeat 217 277 IPR001611 GO:0005515
Seca2g04087 885 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 670 870 - -
Seca2g04087 885 Pfam Protein kinase domain 595 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04087 Seca-Chr2 123488532 123492492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04087 32 865 Receptor kinase-like Gene Family AT5G06940 65.435 0.0 1082
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca2g04087 Pkinase 9.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04087 - - gmx:100794428 1538.09