Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04085 ATGGTTTTGTTGGGCTATGTCTACTTGCTTGAGTTACTAGTGAATATTGATTTATCTAGCTGCTGGTGTCTAAGCACTTGCAAGGGCAATTTGTCTGCTTGCATTCATAATTTTGCAAGTGCATGTGAGATGTTTGGGGGTCATAGAGTAATGGAGTCTCATGATGAGACAGGATGCCAGGCTCCCGAACACCCCATTCTTTGCATTAATAATTGTGGTTTCTTTGGAAGGGCAGCTACCATGAACATGTGTTCCAAGTGCTACAAGGACATGCTTTTGAAGCAGGAACAGGACAAACTCGCTGCATCATCGGTTGAAAACATTGTGAATGGCGGTTCCAATGGCAATGGAAAGCAGGTCGTGACTGCAGGTGTTGTTGATGTAAAAGTTGGAACTGTGGAGGTCAAGAAAGTCTCTGCTCAGATTTCTGGGGATTCCTCCTCTGGTGAGAGCTTGGAGAATAAAGCCAAGACTGGTCCCAGCAGATGTGCCACATGCAGGAAACGTGTTGGATTAACTGGTTTCAGCTGCAAATGTGGCAACCTCTTTTGTGCAATGCATCGCTATTCTGATAAACATGATTGCCCTTTTGATTATAAGACTGTTGGTCAGGAGGCCATAGCTAAAGCCAATCCAGTAATTAAGGCAGATAAGCTTGATAAAATATAG 669 0.438 MVLLGYVYLLELLVNIDLSSCWCLSTCKGNLSACIHNFASACEMFGGHRVMESHDETGCQAPEHPILCINNCGFFGRAATMNMCSKCYKDMLLKQEQDKLAASSVENIVNGGSNGNGKQVVTAGVVDVKVGTVEVKKVSAQISGDSSSGESLENKAKTGPSRCATCRKRVGLTGFSCKCGNLFCAMHRYSDKHDCPFDYKTVGQEAIAKANPVIKADKLDKI. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04085 222 ProSiteProfiles Zinc finger AN1-type profile. 157 203 IPR000058 GO:0008270
Seca2g04085 222 SMART AN1_Zf_4 163 200 IPR000058 GO:0008270
Seca2g04085 222 PANTHER AN1-TYPE ZINC FINGER PROTEIN 63 222 - -
Seca2g04085 222 ProSiteProfiles Zinc finger A20-type profile. 62 96 IPR002653 GO:0003677|GO:0008270
Seca2g04085 222 FunFam Zinc finger AN1-type containing 6 136 218 - -
Seca2g04085 222 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 67 104 - -
Seca2g04085 222 SMART A20_3 65 89 IPR002653 GO:0003677|GO:0008270
Seca2g04085 222 Pfam A20-like zinc finger 66 89 IPR002653 GO:0003677|GO:0008270
Seca2g04085 222 Gene3D - 50 110 - -
Seca2g04085 222 Gene3D - 138 218 IPR035896 -
Seca2g04085 222 Pfam AN1-like Zinc finger 163 200 IPR000058 GO:0008270
Seca2g04085 222 SUPERFAMILY AN1-like Zinc finger 154 217 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04085 Seca-Chr2 123430635 123433248 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04085 55 222 C2H2 Transcription Factor Family AT3G52800 42.775 1.39e-39 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04085 - - gmx:100499995 306.99