Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04083 ATGGCGCAGAAGAACAAAGCTAGGGTTTCCGATGATGAAGAAATCACCGAAGCTCAACCTCAAGAAAATAGCCTCTACCAGGTTCTTGGAGTGGAGAGAACAGTCTCTCAACAGGAAATAAAGAAAGCGTATTACAAATTAGCGTTGCGGCTTCATCCTGATAAGAACCCCGGTGATGAGGAGGCTAAAGAGAAATTTCAGCAACTGCAAAAAGTTATCTCAATTCTCGGGGATGAAGAGAAACGGGCCCTCTATGATCAGACTGGTTGTGTTGATGATGCTGTGAGTGTTCTATTATTATTATTGCTCACTGCTGCAGATGAATATCAGGATCTTGCTGGAGATGTTGTTCAGAATCTTCATGAGTTTTTCAGAACAATGTACAAGAAGGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGGGGATCTGACTCTGAGAAAAACGATTTGATTGATCTGTACAAGAAGTGCAAGGGGAATATGAACAGGCTTTTTTGTTCAATGCTTTGTTCAGATCCTAAACTTGACTCACACCGATTCAAGGATATTATTGATGAGGCTATAGCTGCTGGAGAATTAAAGGCAACAAAAGCATACCAGAAATGGGCTAAGGAAGTATCTGAAACCAAACCACCGACAAGTCCTATACGGAGGAGGGCAAGGTCAGAAAAGAAGTCTGAAACAGATCTGTGTGCAATCATAGCACAGCGCCGAAGTGAGAGGAAAGGCCAGTTTGATTCAATGTTCTCATCTCTAATTTCGAAATATGGCGGGGGTGATATGGTAGAACCCTCTGAAGAAGAATTCGAAGCTGCACAGAGAAAACTGGAGAGTGGAAGGTCCTCAAAAAAATCAAAGCAATCAAAGCGGAAGTAA 885 0.4203 MAQKNKARVSDDEEITEAQPQENSLYQVLGVERTVSQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTGCVDDAVSVLLLLLLTAADEYQDLAGDVVQNLHEFFRTMYKKVTEADIEEFEANYRGSDSEKNDLIDLYKKCKGNMNRLFCSMLCSDPKLDSHRFKDIIDEAIAAGELKATKAYQKWAKEVSETKPPTSPIRRRARSEKKSETDLCAIIAQRRSERKGQFDSMFSSLISKYGGGDMVEPSEEEFEAAQRKLESGRSSKKSKQSKRK. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04083 294 Pfam DnaJ domain 25 86 IPR001623 -
Seca2g04083 294 SUPERFAMILY Chaperone J-domain 23 92 IPR036869 -
Seca2g04083 294 PRINTS DnaJ domain signature 26 44 IPR001623 -
Seca2g04083 294 PRINTS DnaJ domain signature 44 59 IPR001623 -
Seca2g04083 294 PRINTS DnaJ domain signature 61 81 IPR001623 -
Seca2g04083 294 MobiDBLite consensus disorder prediction 262 294 - -
Seca2g04083 294 MobiDBLite consensus disorder prediction 270 286 - -
Seca2g04083 294 MobiDBLite consensus disorder prediction 208 227 - -
Seca2g04083 294 CDD DnaJ 26 78 IPR001623 -
Seca2g04083 294 ProSiteProfiles dnaJ domain profile. 24 89 IPR001623 -
Seca2g04083 294 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 106 290 IPR042977 -
Seca2g04083 294 Gene3D DnaJ domain 8 96 IPR036869 -
Seca2g04083 294 SMART dnaj_3 23 81 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04083 Seca-Chr2 123409460 123411965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04083 26 86 C2H2 Transcription Factor Family AT1G74250 39.394 1.47e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04083 2 123409460 123411965 Seca2g04083 2 123409460 123411965 ECH
Seca2g04083 2 123409460 123411965 Seca2g04083 2 123409460 123411965 PCT