Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04077 ATGGCCGACCCTTACTCTAATCTTTTCCCATCATCATCCTCATCACGTTTCTTCCATTTCCCTTCTTCTTCTTCAAACCCTTCTCCACACCACCCTTTTCTCCACAACTTCATCAACACCACCCCCCACACCACCACCACCTTTTTCCATCATATTACTAGTAACACCCCTCCTCCTTCTTCTTCTTCTTTCTCACCCCCTTCTCCTCCTCTAAGAGAAGAACTCCCTCTCTTAACTCTCAGTCCAGCAAAGCAAGAGGAAGAAGAAGAAGAGCAAGAAAGAGAGGACCTCTCTTGCACTCATGCCATGGATGTGGAAGATACAAGAATGGTTAGTAGTAGTAGTAACCCCAAAGAGGAAGAACAACAACAAGAAGAAAATGAAGAAGAAGAAGAAGAAGAAGATGGAAGTGTGACTGTTGCACTTCACATAGGGTTGCCAAGCCCTAGTGCTGCTGAGATGGCTTCAGTGTTTTCTTCTAATTCAGAAAATGGAAGTACCACTGAAGATTCTTCTGCTAATTTTAGGCTCAACAAAGGTCAATATTGGATCCCTACACCTTCTCAGATTCTCATTGGTCCTACACAGTTTTCTTGCCCTGTTTGCTGCAAAACATTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACCCAACCAACAGGAATGTTAAGGCTTCCTTGCTATTGTTGTGCCCCAGGGTGCAGGAACAACATTGATCACCCAAGAGCAAAGCCTCTCAAAGATTTTAGAACACTTCAAACACATTATAAGAGGAAGCATGGGATTAAGCCTTTCATGTGCAGAAAATGTGGTAAGGCTTTTGCTGTTAGAGGAGATTGGAGAACACATGAGAAGAATTGTGGGAAGCTTTGGTATTGTATCTGTGGATCTGATTTCAAGCACAAGAGATCTCTTAAGGATCATATCAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGGATTGATGGGTTTGAAGAAGAAGATGAACCAGCATCTGAAGTAGAACAAGATAATGATTCCACCACTCAGTAG 1080 0.4324 MADPYSNLFPSSSSSRFFHFPSSSSNPSPHHPFLHNFINTTPHTTTTFFHHITSNTPPPSSSSFSPPSPPLREELPLLTLSPAKQEEEEEEQEREDLSCTHAMDVEDTRMVSSSSNPKEEEQQQEENEEEEEEEDGSVTVALHIGLPSPSAAEMASVFSSNSENGSTTEDSSANFRLNKGQYWIPTPSQILIGPTQFSCPVCCKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDSTTQ. 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04077 359 MobiDBLite consensus disorder prediction 151 173 - -
Seca2g04077 359 Gene3D Classic Zinc Finger 259 333 - -
Seca2g04077 359 MobiDBLite consensus disorder prediction 122 136 - -
Seca2g04077 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 281 301 IPR013087 -
Seca2g04077 359 SUPERFAMILY beta-beta-alpha zinc fingers 263 301 IPR036236 -
Seca2g04077 359 Gene3D Classic Zinc Finger 196 219 - -
Seca2g04077 359 PANTHER ZINC FINGER PROTEIN WIP2 43 355 IPR043584 GO:0003700|GO:0010468
Seca2g04077 359 SMART c2h2final6 281 301 IPR013087 -
Seca2g04077 359 SMART c2h2final6 197 219 IPR013087 -
Seca2g04077 359 MobiDBLite consensus disorder prediction 48 137 - -
Seca2g04077 359 ProSitePatterns Zinc finger C2H2 type domain signature. 199 219 IPR013087 -
Seca2g04077 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 224 IPR013087 -
Seca2g04077 359 FunFam Zinc finger protein WIP2 250 332 - -
Seca2g04077 359 MobiDBLite consensus disorder prediction 153 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04077 Seca-Chr2 123308581 123310614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04077 1 355 C2H2 Transcription Factor Family AT3G57670 62.060 5.34e-163 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca2g04077 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04077 - - gmx:100813583 502.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04077 2 123308581 123310614 Seca2g04077 2 123308581 123310614 ECH
Seca2g04077 2 123308581 123310614 Seca4g03757 4 65893963 65896452 ECH
Seca8g04891 8 135470815 135473338 Seca2g04077 2 123308581 123310614 PCT