Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04071 ATGAGTATTTCATCATTTTTGCTTTGCACATCTGCCTTGTGTTCACAAAATTATGTATTTCTGTTTCCATCTCCAAAGAAAGATGCGATTTCCAAAGCCCTATCGTCAAAAAATGTGTTCTTGCTACATGGACCTCCTGGAACGGGAAAAACTACAACAGTGGTGGAAATTATATTACAAGAAGTAAAACGTGGATCTAAAATTCTTGCTTGTGCTGCCTCAAATATTGCTGTTGACAACATTGTTGAGCGGCTAGTTCCACACAGAGTTAAGCTGGTGAGAGTGGGTCATCCTGCACGTTTATTGCCTCAAGTACTGGACAGTGCACTGGATGCTCAGGTACTACGAGGAGATAATAGTGGTCTTGCAAATGACATTCGGAAAGAAATGAAGGCATTGAATGGAAAGCTGCTGAAAACCAGAGACAGAAATACAAGGAGGGACATACAGAAGGAACTTAGGACTCTATCCAAAGAAGAGCGTAAAAGGCAGCAGCTTGCTGTGACAGATGTAATTAAAAGTGCAGATGTAATATTGACTACTCTGATTGGGGCTTTCTCTAAGAAACTAGACATCACTTCATTTGATTTGGTTATTATTGATGAAGCTGCTCAAGCACTTGAGATAGCATGCTGGATACCACTGCTGAAGGGTTCAAGATGTATACTTGCAGGGGACCATCTTCAACTCCCTCCAACCATTCAAAGTGTTGAAGCTGAGAAGAAAGGATTAGGAAGAACCCTCTTTGAACGACTTGCAGAAATGTATGGAGATGAAGTCACATCCATGCTTACTGTCCAGTACCGTATGCATGAACTTATCATGGATTGGTCTTCTAAAGAGCTTTACAACAGTAAGATCAAGGCTCATCCAAGTGTTGCTGCACATATGCTATATGATCTCGAGGATGTAAAGAGGACATCTTCAACTGAACCAACCCTCCTTCTCATAGACACAACTGGATGTGATATGGAAGAAAAGAAAGATGAAGAAGATAGCTCGCTTAATGAAGGTGAGGCCGATGTTGCTATGGCTCATGCAAAGAGATTAGTGCAAAGTGGGGTGCTTCCTTCTGATATTGGAATTATTACCCCATATGCTGCCCAGGTTGTTTTGCTCAAGATGTTGAAGAACAAGGAGGACAAGCTGAAAGATATCGAAATTTCAACAGTTGATGGCTTCCAGGGAAGGGAGAAGGAAGCCATTATTATATCAATGGTTCGATCAAATTCAAAAAAAGAGGTGGGCTTTCTAAGTGATCGCCGGCGAATGAACGTGGCTGTGACACGGGCAAGAAGGCAATGCTGTCTTGTCTGTGACACTGAGACAGTCAGTAGTGATGGATTTCTAAAGCGATTGATTGAGTATTTTGAAGAGCATGGTGAATATCAGAGTGCATCTGAGTACCAGAACTGA 1416 0.4181 MSISSFLLCTSALCSQNYVFLFPSPKKDAISKALSSKNVFLLHGPPGTGKTTTVVEIILQEVKRGSKILACAASNIAVDNIVERLVPHRVKLVRVGHPARLLPQVLDSALDAQVLRGDNSGLANDIRKEMKALNGKLLKTRDRNTRRDIQKELRTLSKEERKRQQLAVTDVIKSADVILTTLIGAFSKKLDITSFDLVIIDEAAQALEIACWIPLLKGSRCILAGDHLQLPPTIQSVEAEKKGLGRTLFERLAEMYGDEVTSMLTVQYRMHELIMDWSSKELYNSKIKAHPSVAAHMLYDLEDVKRTSSTEPTLLLIDTTGCDMEEKKDEEDSSLNEGEADVAMAHAKRLVQSGVLPSDIGIITPYAAQVVLLKMLKNKEDKLKDIEISTVDGFQGREKEAIIISMVRSNSKKEVGFLSDRRRMNVAVTRARRQCCLVCDTETVSSDGFLKRLIEYFEEHGEYQSASEYQN. 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04071 471 FunFam P-loop containing nucleoside triphosphate hydrolase 268 471 - -
Seca2g04071 471 CDD DEXXQc_SMUBP2 24 269 - -
Seca2g04071 471 SMART AAA_5 36 288 IPR003593 GO:0016887
Seca2g04071 471 Pfam AAA domain 26 236 IPR041677 GO:0004386
Seca2g04071 471 Pfam AAA domain 245 441 IPR041679 -
Seca2g04071 471 SMART ultradead3 19 269 IPR014001 -
Seca2g04071 471 NCBIfam IGHMBP2 family helicase 170 467 IPR004483 GO:0003677|GO:0005524
Seca2g04071 471 Coils Coil 123 143 - -
Seca2g04071 471 Gene3D - 27 252 IPR027417 -
Seca2g04071 471 Gene3D - 268 471 IPR027417 -
Seca2g04071 471 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 27 470 - -
Seca2g04071 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 27 457 IPR027417 -
Seca2g04071 471 CDD SF1_C_Upf1 270 458 IPR047187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04071 Seca-Chr2 123182390 123190324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04071 26 205 Core DNA Replication Machinery Family AT1G08840 27.778 6.36e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04071 - K19036 gmx:100810545 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04071 2 123182390 123190324 Seca2g04071 2 123182390 123190324 ECH