Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04067 ATGGCCCAATCATTTGTCTTGGATGTTGCTGATTCACTGTTAAGGAAGCTTGCTTTGTATGCATATGAAGAAGCTTCTCGAGCTTATGGTGTGTATGATGATCTGCAAGGGATCAAAGACACACTGTCAATTGTCAAAGGGGTGCTATTGGATGCTGAGTTGAAGAAGGACCAAAGACATGGCTTGCGTGAATGGCTGAGGCAGATTCAACATGTTTGTTCCTACGCTGAAGATGTCTTGGATGGATTTGAGTGTCAAAACTTGCGAAACGATCTCGTCAAAGCTTCTGGAAGCACCACCAGCATGAAGGTAGGTCACTTCTTTTCTTCGTCTAATCCTATTGTTTTCCGTCTTAGGATGGCTCATCAAATCAAAGATGTTAGGGATAGGTTGGATAAGGTAGCAGCTGATGGGACTAGGTTTGGTCTTGAGAGAATTGACATTGATCCCGGATTTGTGGGAATTGGAGGCTTGGGGAAGACCACACTTGCAAAGCTGGTATTCAATGATAAGAGGGTGGATGAACTTTTCCAATTGAAGATGTGGGTGTGTGTCTCATATGATTTTGACATTAGGCAGATAATTATTAAAATCATCAACTCTGCTTCAGCTTCAAATATTGCCATTGTCCCCCAAGAAAACATTAACCACTTAGATATTGAGCAACTACAACTTCGCCTTCGCTACAAACTTTCTGGTCAAAAGTTTTTACTTGTTCTAGATGATATATGGAATGATGATCGAGCGAAATGGATTGAGTTGAAAGATTTGATTAAAGTTGGTGCAAAAGGAAGCAAAATCTTAGTCACAACACGTAGTAGCTCAATTGCTTCAATGATGGGCACAGTTGATCCATGTGTTTTAAGAGGTCTTTCTCTAAAGAACTGTTTATCTTTGTTTGTCAAATGGGCATTTAAGGAAAGCGAAGAAAAAAAATATCCAAATCTAGTTGAGATTGGAAAAGAAATTGTGAAAAAATGTCACGGGGTTCCACTAGCAGTGAGAACATTAGGAAGCTCCTTGTACTCAAAGTTTGATTTAGATAAGTGGGAATTTGTAAGAGACCATGAGATATGGAATCTGAACCAGAAGGAAAATGACATTTTACCTGCACTAAAGCTGAGCTATGATCAAATGCCATCCTATTTGAGGCACTGTTTTGCTTATTTTTCCCTTTTCCCCAAAGATTATCGCTTCTCTAATATTATCCCTACTAATCTTTGGCTGGCATCTGGATCACTTCAATCCCCAGATGGAAGTCAAACGCTAGATAATGTTGCAAGAGAATGTATTGAAGAATTACATTCAAGATCATTTCTTCAGGATTTTGAAGACTATGGTCCGTTATACTTCTTCAAAGTACATGATTTGGTGCATGATCTTGCATTGTATGTTGCGAAAGAGGAATTTCTAGTGGTAGACTCCAATACTAGGAATATACCTGAGCAAGTAAGGCATTTATCACTTATTAAAACTGATTCACTCGGCCATGCTTTGTTCCCCAAGTCCAAAAGTGTGAGAACTGTACTACTTCCCATCAATGGAGTTGGTCTTGACAATGAAACTCTTTTGGATACATGGATGTCGAGATACAAATACTTACGGTATTTAGATTTAAGTGATTCTTCATTTGAGACACTACCAAATTCAATTGCTAAATTGGAGCATTTGCGAGTTCTCTATCTTTCTAAGAACCGCAAAATCAAAAGACTTCCTCGTTCTATATGCAAACTTCAAAACTTGCAGCTTTTGTCACTTAAGGGATGCATTGAGCTTGAAACATTGCCTAAAGGATTTGGGAATCTGATTAGCCTTCGACACCTGAGTATAACCACAAAACAGTCCCTTCTGTCAGAAAATGAATTTGCAAGCTTGAGTAATCTTCAAACTTTGGGGTTCTTTTATTGTGACAATTTGAAGTTTTTGTTCAGCAAGGCACAACTCACTTCTCTTGAAGAATTGGTTGTTCTATCATGTGGGAGCCTAGAGTCCTTACCTCTTTATATTCTCCCGAAATTACAGACTCTGTCAGTCATTGACTGTAAGGTATTAAACCTCTCATTGAACCAGGAAAGACCAATAACTGACTATGAGAGGCCTAAACTGTCCATGAATGATGATAGTCCAAGCAAAAACTTTCAAATGGTACAAAAGTCAGTGAACCATGAAAGCCCAATCCAAATATCAAGGATGAAGTATCTACATCTGGAGGGTTTTCCAAGGCTTCTAACATTGCCTCAATGGATTGAAGGAGCAGCTGACACTTTACATACCTTGATTATTTTTAATTTTCCTAATCTCAAGATGCTTCCTGAGTGTCTAACAACAATGACTCATCTTAAGAGGCTCCATATTTTTGACTGTCCTCAACTGTCAAGTTTTCCAAGTGACATGCACAGCCTCACTACCCTTGAACATTTGATGATAGGTGGTTGTCCTGAATTGTGCAGAAAATGTCAGCCACAATGTAATGAATATTGGCACATGATTTCTCGCATCAAACACATTTTCATTGGAGAACCAAGAGGAGAGGAGGAACAAAGTCATCGAACTCAAAGTCTCAGACTTGAACTGCTCCAAGCTCAAAAATCAATTGCTGCACTGTTGCCAGCATTGTTGATAATTCAGAGAGATGAAGCAAACATTGATGAGGATTGA 2658 0.389 MAQSFVLDVADSLLRKLALYAYEEASRAYGVYDDLQGIKDTLSIVKGVLLDAELKKDQRHGLREWLRQIQHVCSYAEDVLDGFECQNLRNDLVKASGSTTSMKVGHFFSSSNPIVFRLRMAHQIKDVRDRLDKVAADGTRFGLERIDIDPGFVGIGGLGKTTLAKLVFNDKRVDELFQLKMWVCVSYDFDIRQIIIKIINSASASNIAIVPQENINHLDIEQLQLRLRYKLSGQKFLLVLDDIWNDDRAKWIELKDLIKVGAKGSKILVTTRSSSIASMMGTVDPCVLRGLSLKNCLSLFVKWAFKESEEKKYPNLVEIGKEIVKKCHGVPLAVRTLGSSLYSKFDLDKWEFVRDHEIWNLNQKENDILPALKLSYDQMPSYLRHCFAYFSLFPKDYRFSNIIPTNLWLASGSLQSPDGSQTLDNVARECIEELHSRSFLQDFEDYGPLYFFKVHDLVHDLALYVAKEEFLVVDSNTRNIPEQVRHLSLIKTDSLGHALFPKSKSVRTVLLPINGVGLDNETLLDTWMSRYKYLRYLDLSDSSFETLPNSIAKLEHLRVLYLSKNRKIKRLPRSICKLQNLQLLSLKGCIELETLPKGFGNLISLRHLSITTKQSLLSENEFASLSNLQTLGFFYCDNLKFLFSKAQLTSLEELVVLSCGSLESLPLYILPKLQTLSVIDCKVLNLSLNQERPITDYERPKLSMNDDSPSKNFQMVQKSVNHESPIQISRMKYLHLEGFPRLLTLPQWIEGAADTLHTLIIFNFPNLKMLPECLTTMTHLKRLHIFDCPQLSSFPSDMHSLTTLEHLMIGGCPELCRKCQPQCNEYWHMISRIKHIFIGEPRGEEEQSHRTQSLRLELLQAQKSIAALLPALLIIQRDEANIDED. 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04067 885 Gene3D - 291 374 IPR042197 -
Seca2g04067 885 Pfam Leucine rich repeat 533 589 IPR001611 GO:0005515
Seca2g04067 885 Gene3D - 375 464 IPR036388 -
Seca2g04067 885 Gene3D - 10 123 - -
Seca2g04067 885 Gene3D - 124 284 IPR027417 -
Seca2g04067 885 Pfam NB-ARC domain 151 377 IPR002182 GO:0043531
Seca2g04067 885 SUPERFAMILY L domain-like 453 842 - -
Seca2g04067 885 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 151 389 IPR027417 -
Seca2g04067 885 Gene3D Ribonuclease Inhibitor 473 695 IPR032675 -
Seca2g04067 885 Gene3D Ribonuclease Inhibitor 712 830 IPR032675 -
Seca2g04067 885 PRINTS Disease resistance protein signature 230 244 - -
Seca2g04067 885 PRINTS Disease resistance protein signature 576 592 - -
Seca2g04067 885 PRINTS Disease resistance protein signature 149 164 - -
Seca2g04067 885 PRINTS Disease resistance protein signature 327 341 - -
Seca2g04067 885 PANTHER DISEASE RESISTANCE PROTEIN RP 50 744 IPR044974 GO:0006952
Seca2g04067 885 Pfam Rx N-terminal domain 11 97 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04067 Seca-Chr2 123156476 123160694 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04067 151 693 WRKY Transcription Factor Family AT5G45050 20.898 4.89e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04067 - - gmx:100794422 1119.76