Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04065 ATGGCCGAATCATTTGTCTTTGATATTGCTCATTCACTTTTGGGGAAGCTTGCTTCTTATGCTTATGAAGAAGCTTCTCGAGCTTATGGGGTGTATGATGATATGCAAGGGATCAAAGACACTTTGTCAATTGTCAAAGGTCTGCTACTGGATGCTGAGGAGAAGAAGGACCAAAAGCATGGCTTGCGTGAATGGCTCAGACAGATTGAAAATGTCTGCTGCTATGCTGAAGATGTTTTGGATGGATTTGAGTTCCAACACATGCGAGACCAAGTTGTAAAAGCCTCTGGTGGCACCACCATGAAGGTAGATCACTTCTTTTCCTTGCATAATCCTCTTGTTTTCCGTTTTAGGATGGCTCATCAAATCAAAGATGTTAGGGATAGATTGGATAAGGTAGCAGCTGATGGCACCAAGTTTGGTCTTCAGATAATTGAATTTGATCCTAGACTTTGTGTGCAAAAGAGAGAAATGACTCATTCCCACGTTGATGCTTCAGATGTGTTAGGAAGGGAGATTGATGAGGAAGAAATTGTGCAGCTCTTGATGCAACCTCACCTTGATGGTGATCAAAGTCCTTGTGTTATTCCCATAGTGGGAATTGGAGGCTTGGGGAAGACCACACTTGCAAAGTTAGTGTTCAATGATAAGAGGATGGATCCACTTTTCCAATTGAAGATGTGGGTGTGTGTCTCTGATGATTTTGACATTAGGCAGATAGTTATTAAGATTATTAATTCTGTTTCTATTGCTCACCAAGAAAACATTAACAACTTGGATATTGAGCAACTACAAAGTCGTCTTAGACAAAAACTTTCTGGTCAGAAGTTTTTACTTGTCTTAGATGATATATGGAATGATGATCGTTCAAAATGGATTGAGTTGAAAGATTTGTTGAAAGTTGGTGCAATAGGGAGTAAAATCTTAGTGACAACACGTAGAATCACAATTGCTTCAATGATGGGCACAGTTCCCTCATATGTTTTAGAAGGTCTTTCTCTAGAGGATTGTTTATCTCTATTTGTTAAATGGGCATTTAAGGAAGGAGAAGAAAAAAAATATCCAAAACTAGTGGAGATTGGAAAAGAGATTGTGAAAAAATGCCAAGGAGTTCCACTAGCATTGAAAACATTAGGAAGTTCCCTATTCTCAAAATTTGATATAGATAAATGGGAATTTGTAAGAGACAATGAGATATGGAATTTTAAACAAAACAAAGATGACATTTTCCCTGTTCTTAAATTTAGCTATGATCAAATGCCATCCTATTTGAGGCATTGTTTCGCTTATTTTTCTCTTTATCCCAAAGATTATCACTTTCTTAATATTGGGATTACCAATCTTTGGCTGGCACTTGGATTACTTCAATGCCCTGATGGAAGCCAAAAGCTATATAATATTGCAAGAGAACACATTGATGAGTTACATTCAAGGTCATTTCTTCAAGATTTTGAAGACTATGGGCAGTTTTTCTATTTCAAAGTACATGATTTGGTGCATGATCTTGCAGTGTATGTTGCAAAAGAGGAGTTTGTAGTGGTAGACTCGCGTACACAGAGTATACCTGAGCAAGTAAAGCATTTATCAATTGTTGAAAATGGTTCACTTAGCCATACTTTGTTCCCCAAGTCTAGAAGGGTGAGAACTATACTATTTCCCATCCATGGAGTGGGTCTTGACAGTGAAACTCTTTTAGATACATGGATATCAAGATACAAGTACTTATGGTATTTAGATTTAAGTGATTCTTCCTTCAAGACTCTACCTAATTCAATTGCCAAATTGGAGCATCTGAGGGCTCTTGACCTTTCTAGGAATTGCAAAATCAAAAGACTTCCTCATTCTATATGCAAACTCCAAAAGTTGCAACTTTTGTCACTCTTTGGATGCAGGGAGCTTGAAACATTGCCTAAAGGACTAGGGAAGCTGATCAGCCTTAGAATACTGTATATAACCACAAAGCAATATGTTCTATCACAGAATGAATTTGCAAGTTTGAGTAATCTTCAGAGATTGGGCTTTTATTTTTGTGACAATTTGAAATCTTTATTCAATGGGGTAGAACTCACTTCCCTTGAAGCATTGATTGTTCGATCATGTGGGAGCCTAGAGTTCTTACCTCTTTATATTCTCCCTAAATTAGAGACTCTATATGTTGAAGACTGTGAGAGCTTAAACCTGTCATTGTACCAGGAAAGCTCAATCACAGAATTGAGGATGAAATTTCTGCATCTCAGGAATCTTCCAAGGCCTCTAACATTTCCTGGATGGATTGAAGGAGCTTCAGACACTTTACAGACCTTGCAAATTCTTGATTTTCCTGATCTTCAGATGCTTCCTGAGTATTTGACAACAATGACTGATCTTAAGAGGCTTCATATTCTTCATTGTCCTCAATTGTTGAGTCTTCCAAGTGGCATGCATCACCTCACTGCCCTTGAAGAATTGGTCATATATGGTTGCCCTGAATTGTGCCAAAAATGTCAGCCACAATCTGGTGAGTACTGGCCTGTCCTTTCTCACATCAAAAGAGTTTTCATTGGAGACCCAACAGAAGAGGAGGAATGA 2568 0.3816 MAESFVFDIAHSLLGKLASYAYEEASRAYGVYDDMQGIKDTLSIVKGLLLDAEEKKDQKHGLREWLRQIENVCCYAEDVLDGFEFQHMRDQVVKASGGTTMKVDHFFSLHNPLVFRFRMAHQIKDVRDRLDKVAADGTKFGLQIIEFDPRLCVQKREMTHSHVDASDVLGREIDEEEIVQLLMQPHLDGDQSPCVIPIVGIGGLGKTTLAKLVFNDKRMDPLFQLKMWVCVSDDFDIRQIVIKIINSVSIAHQENINNLDIEQLQSRLRQKLSGQKFLLVLDDIWNDDRSKWIELKDLLKVGAIGSKILVTTRRITIASMMGTVPSYVLEGLSLEDCLSLFVKWAFKEGEEKKYPKLVEIGKEIVKKCQGVPLALKTLGSSLFSKFDIDKWEFVRDNEIWNFKQNKDDIFPVLKFSYDQMPSYLRHCFAYFSLYPKDYHFLNIGITNLWLALGLLQCPDGSQKLYNIAREHIDELHSRSFLQDFEDYGQFFYFKVHDLVHDLAVYVAKEEFVVVDSRTQSIPEQVKHLSIVENGSLSHTLFPKSRRVRTILFPIHGVGLDSETLLDTWISRYKYLWYLDLSDSSFKTLPNSIAKLEHLRALDLSRNCKIKRLPHSICKLQKLQLLSLFGCRELETLPKGLGKLISLRILYITTKQYVLSQNEFASLSNLQRLGFYFCDNLKSLFNGVELTSLEALIVRSCGSLEFLPLYILPKLETLYVEDCESLNLSLYQESSITELRMKFLHLRNLPRPLTFPGWIEGASDTLQTLQILDFPDLQMLPEYLTTMTDLKRLHILHCPQLLSLPSGMHHLTALEELVIYGCPELCQKCQPQSGEYWPVLSHIKRVFIGDPTEEEE. 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04065 855 CDD RX-CC_like 2 134 IPR038005 -
Seca2g04065 855 Gene3D - 331 416 IPR042197 -
Seca2g04065 855 Gene3D - 10 124 - -
Seca2g04065 855 Pfam Rx N-terminal domain 12 95 IPR041118 -
Seca2g04065 855 SUPERFAMILY L domain-like 494 848 - -
Seca2g04065 855 Pfam NB-ARC domain 186 418 IPR002182 GO:0043531
Seca2g04065 855 Gene3D Ribonuclease Inhibitor 508 843 IPR032675 -
Seca2g04065 855 PRINTS Disease resistance protein signature 195 210 - -
Seca2g04065 855 PRINTS Disease resistance protein signature 368 382 - -
Seca2g04065 855 PRINTS Disease resistance protein signature 271 285 - -
Seca2g04065 855 PRINTS Disease resistance protein signature 593 609 - -
Seca2g04065 855 FunFam Probable disease resistance protein At1g61300 152 325 - -
Seca2g04065 855 Gene3D - 151 326 IPR027417 -
Seca2g04065 855 PANTHER DISEASE RESISTANCE PROTEIN RP 51 745 IPR044974 GO:0006952
Seca2g04065 855 Gene3D - 417 505 IPR036388 -
Seca2g04065 855 Pfam Leucine rich repeat 576 631 IPR001611 GO:0005515
Seca2g04065 855 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 430 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04065 Seca-Chr2 123138450 123141134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04065 196 824 WRKY Transcription Factor Family AT5G45050 22.358 2.13e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04065 - - gmx:100794422 1231.85