Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04059 ATGATGAATCACTTTACCGTAGACACTGAAGATTCTTTTGCAAGCTTGCTTGAGCTTGCATCCAATAATGATGTTGAAGGTTTCAAACGATTGATTGAGTGTGATCCTTCCTCTGTAGATGAGGTTGGGCTATGGTATGGTCGTAGTAAGGGATCAAAGCAGATGGTCAATGAGCAAAGAACACCTTTGATGGTTGCTGCTACCTATGGTAGCATTGATATTATGAAACTGATTCTTTCTCTATCTGATGCTGACATCAACCGGCCTTGTGGCCTTGACAAGAGCACTGCCCTTCACTGTGCGGCATCAGGTGGGGCTGAAAATGCTGTTGATGCTGTGAAACTGCTTCTGGCAGCAGGGGCTGATCCAAATTCGGTCGATGCCAATGGGAATCGTCCTGCTGATGTTATTGTTTCTCCTCCCAAGCTTGAATATGTCAGAAACAGTCTTGAAAACCTTCTTCAAACTGATGATTCTATTGGTAGGTGTAATCTTAGAGTGATCACAACTTTGTCGAATGCATATTCTCCGCCTTTATCAACTTCACCTGAGAACGGGTCTCCTTCTGCACAAGATCTCCAGTTGAAGTTAAAGTCAAATGATGTTCCTGTTTCTTCTGCATCTGAGAAGAAAGAATATCCTGTTGATCCATCCCTTCCGGACATCAAGAACAGCATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTTCGACCTTGTTCACGTGCTTATTCGCATGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAGAATGCCCGAAGAAGGGACCCAAGAAAGTACCATTACAGCTGTGTCCCTTGTCCTGATTTTCGGAAGGGTGCTTGCCGGAGAGGAGATATGTGTGAATATGCTCATGGGGTTTTTGAGTGCTGGCTACATCCAGCACAATATCGAACCCGTCTCTGCAAGGATGGGACAAATTGTGCAAGGAGAGTTTGCTTCTTTGCCCACACTGCTGAAGAGCTGAGACCGTTATATGTTTCAACTGGTTCTGCTGTTCCATCTCCTCGATCAAGCACATCTTCTGCCATGGATTTTGCTGCAGCCATGAGCATGTTGCCTGGCTCCCCTTCCTCAATGTCTGTCATTTCTCCTTCACCATTCACTCCACCCATGTCACCTTCTGCCAATGGCATTTCACACAATTCTGTTGCTTGGCCCCAGCCAAACATCCCAGCATTACATCTTCCAGGAAGTAATCTTCAGTCTAGTCGATTGAGAGCTTCACTCAATGCTAGAGATATTCCTGCAGATGATTTTGACTTGTTATCTGAATATGATCAACAGCAACAGCTCCCTATGAATTCTAATACTCTAAACCGTTCTGGTCGTATGAAACCACTGACTCCATCAAATCTTGATGATCTCTTCTCTGCCGAGAGTTCTTCTCCTCGATATGCTGATCCAACACTGACTTCAACAGTTTTTTCTCCAACTCACAAATCAGCTGTCTTTAATCAATTTCAGCAGCAGCAAAACTTGTTGTCACCTGTGAATACAAATTTTTCTTCTAAAAATGTTGAGCATCCTTTATTTCAGGCCTCTTTTGGGGTTCAGGCATCAGGAAGAATGTCTCCACGAAATGTGGAACCTATTTCTCCAATGAGCTCTAGGATTTCTATGCTAGCTCAACGTGAGAAGCAGCAACAATTTCGAAGCCTAAGCTTCCGGGAAGTTGGTTCCAACTCTGCTGCTGCTGCAGCTGCTGCTTCAGCCAATTCTTGGTCAAAATGGGATTCCCCTAATGCTAATGGTAAGGTGGATTGGGCTGTCAGTGCAGATGAATTAGGTAAGCTCCGCAGATCATCTTCATTTGAGCTTGGGAACAATGGTGAGGAACCTGATTTATCATGGGTGCAGTCACTTGTTAAAGAATCTCCAACTGAGATTAAAGAGAAATTGGCAACTACTGGATCCTCTAGCGAGGGATTAAATGTGAGCACACAAATGGAGTCTGTTGATCATGCTGTACTGGGAACATGGCTTGAACAGATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA 2058 0.4417 MMNHFTVDTEDSFASLLELASNNDVEGFKRLIECDPSSVDEVGLWYGRSKGSKQMVNEQRTPLMVAATYGSIDIMKLILSLSDADINRPCGLDKSTALHCAASGGAENAVDAVKLLLAAGADPNSVDANGNRPADVIVSPPKLEYVRNSLENLLQTDDSIGRCNLRVITTLSNAYSPPLSTSPENGSPSAQDLQLKLKSNDVPVSSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCARRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAMDFAAAMSMLPGSPSSMSVISPSPFTPPMSPSANGISHNSVAWPQPNIPALHLPGSNLQSSRLRASLNARDIPADDFDLLSEYDQQQQLPMNSNTLNRSGRMKPLTPSNLDDLFSAESSSPRYADPTLTSTVFSPTHKSAVFNQFQQQQNLLSPVNTNFSSKNVEHPLFQASFGVQASGRMSPRNVEPISPMSSRISMLAQREKQQQFRSLSFREVGSNSAAAAAAASANSWSKWDSPNANGKVDWAVSADELGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLATTGSSSEGLNVSTQMESVDHAVLGTWLEQMQLDHLVAQQN. 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04059 685 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Seca2g04059 685 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Seca2g04059 685 PANTHER UNKEMPT FAMILY MEMBER 18 636 IPR045234 -
Seca2g04059 685 SMART ANK_2a 93 125 IPR002110 GO:0005515
Seca2g04059 685 SMART ANK_2a 11 41 IPR002110 GO:0005515
Seca2g04059 685 SMART ANK_2a 58 88 IPR002110 GO:0005515
Seca2g04059 685 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
Seca2g04059 685 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Seca2g04059 685 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Seca2g04059 685 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Seca2g04059 685 Gene3D - 9 152 IPR036770 -
Seca2g04059 685 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
Seca2g04059 685 Gene3D - 272 334 - -
Seca2g04059 685 SUPERFAMILY Ankyrin repeat 15 140 IPR036770 -
Seca2g04059 685 Pfam Ankyrin repeats (3 copies) 20 127 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04059 Seca-Chr2 123074270 123076378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04059 10 678 C2H2 Transcription Factor Family AT5G12850 53.659 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca2g04059 Ank_2 6.3e-11 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04059 - - ccaj:109796653 1158.67