Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04049 ATGGGTAACTGCTGCGCGACCCCCTCTGTTTCCGGCGAGGAACAGACCAAGAAGAAGAACAAGAAGGGTAAGAAGGAAAACCCTTTTGCAACCGACTACGGTCACAACAACGGTGGAGGGTCAAAACTCACCGTTTTGAAGGACCCAACAGGTAGGGAGATCGAGGTTCGGTATGAGCTAGGTCGGGAGCTAGGAAGGGGAGAGTTCGGAATAACGTACCTGTGCACGGATAAGGAAACAAGGGAAGAGTATGCGTGCAAGTCAATATCGAAGAAGAAGCTGAGAACAGCAATAGACATTGAAGATGTGAGGAGGGAAGTGGAGATCATGAGACACTTACCAAGACACTCTAACATCGTGTGGTTGAAAGATACTTATGAAGATGACAATGCTGTGCATCTTGTTATGGAGCTTTGTGAAGGTGGAGAGCTCTTCGATCGCATCGTAGCGCGTGGCCACTACACTGAACGCGCCGCCGCAGCTGTCACTAAAACCATCGTTGAAGTAGTCCAGATGTGCCACAAACATGGTGTGATGCATCGGGATCTCAAGCCTGAGAACTTTTTGTTTGCCAATAAGAAGGAAACAGCAGCTCTGAAAGCCATAGATTTCGGATTGTCAGTGTTTTTTAAACCAGGGGAAAGATTTAATGAAATAGTTGGAAGTCCATATTACATGGCTCCTGAGGTATTAAAGAGGAATTATGGCCCAGAAGTAGATATTTGGAGTGCAGGAGTAATTCTATACATCTTGCTTTGTGGTGTCCCACCATTTTGGGCAGAAACTGAACAAGGAGTTGCACAAGCAATTATACGATCTGTTGTCGATTTCAAAAGGGATCCATGGCCAAAAGTTTCTGATAATGCGAAAGACCTTGTGAAGAAGATGCTAGATCCTGATCCGAGGCGGCGGCTTACTGCACAGGAAGTGTTAGATCATCCATGGTTACAAAATGCAAAGAAAGCTCCTAATGTTTCTTTAGGAGAAACAGTAAAAGCAAGACTCAAGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTCTGAGGGTGATTGCAGAGCATTTGACAGTAGAAGAAGCTGCTGGACTAAAGGAGGGGTTCCAGCGTATGGATACAAACAACAAAGGCAAGATTAACATTGATGAACTACGAGTAGGGTTGCACAAACTAGGCCATCAAATTCCTGAAGCAGATCTCCAAATTCTTATGGAAGCAGGTGATGTAGACAGGGATGGGCACCTAGATTATGGAGAGTTTGTAGCCATTACTGTTCATCTGAGAAAAATGGGCAATGATGAGCACCTTCACAAAGCCTTCCAATTTTTTGATAGGAACCAAAGTGGGTATATTGAGATTGACGAGCTACGTGATGCCTTATCCGATGAGATTGACCCTAACAGTGAGGAAGTCATTAATGCAATTATGCATGATGTGGACACAGATAAGGTCAGTCTATTTTCACTTGGTAGATCAATTTTCTTTTTCTTTTTTCTTTCCATGTGGCTATGCTTAAAAGGTATATTTTTGTCATCTTGTTTTATTAATTGA 1551 0.432 MGNCCATPSVSGEEQTKKKNKKGKKENPFATDYGHNNGGGSKLTVLKDPTGREIEVRYELGRELGRGEFGITYLCTDKETREEYACKSISKKKLRTAIDIEDVRREVEIMRHLPRHSNIVWLKDTYEDDNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTKTIVEVVQMCHKHGVMHRDLKPENFLFANKKETAALKAIDFGLSVFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKRDPWPKVSDNAKDLVKKMLDPDPRRRLTAQEVLDHPWLQNAKKAPNVSLGETVKARLKQFSVMNKLKKRALRVIAEHLTVEEAAGLKEGFQRMDTNNKGKINIDELRVGLHKLGHQIPEADLQILMEAGDVDRDGHLDYGEFVAITVHLRKMGNDEHLHKAFQFFDRNQSGYIEIDELRDALSDEIDPNSEEVINAIMHDVDTDKVSLFSLGRSIFFFFFLSMWLCLKGIFLSSCFIN. 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04049 516 ProSitePatterns Protein kinases ATP-binding region signature. 64 87 IPR017441 GO:0005524
Seca2g04049 516 ProSiteProfiles Protein kinase domain profile. 58 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04049 516 ProSitePatterns EF-hand calcium-binding domain. 408 420 IPR018247 -
Seca2g04049 516 Gene3D Transferase(Phosphotransferase) domain 1 144 324 - -
Seca2g04049 516 Gene3D Phosphorylase Kinase; domain 1 60 143 - -
Seca2g04049 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 178 190 IPR008271 GO:0004672|GO:0006468
Seca2g04049 516 FunFam Calcium-dependent protein kinase 1 60 143 - -
Seca2g04049 516 SUPERFAMILY EF-hand 345 483 IPR011992 -
Seca2g04049 516 ProSiteProfiles EF-hand calcium-binding domain profile. 431 466 IPR002048 GO:0005509
Seca2g04049 516 MobiDBLite consensus disorder prediction 1 46 - -
Seca2g04049 516 ProSiteProfiles EF-hand calcium-binding domain profile. 359 394 IPR002048 GO:0005509
Seca2g04049 516 Pfam Protein kinase domain 58 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04049 516 FunFam Calcium-dependent protein kinase 7 325 490 - -
Seca2g04049 516 ProSitePatterns EF-hand calcium-binding domain. 444 456 IPR018247 -
Seca2g04049 516 MobiDBLite consensus disorder prediction 14 29 - -
Seca2g04049 516 PANTHER SERINE/THREONINE-PROTEIN KINASE 22 483 - -
Seca2g04049 516 SUPERFAMILY Protein kinase-like (PK-like) 57 324 IPR011009 -
Seca2g04049 516 Pfam EF-hand domain pair 364 424 IPR002048 GO:0005509
Seca2g04049 516 Pfam EF-hand domain pair 434 483 IPR002048 GO:0005509
Seca2g04049 516 ProSiteProfiles EF-hand calcium-binding domain profile. 395 430 IPR002048 GO:0005509
Seca2g04049 516 SMART efh_1 399 427 IPR002048 GO:0005509
Seca2g04049 516 SMART efh_1 435 463 IPR002048 GO:0005509
Seca2g04049 516 SMART efh_1 363 391 IPR002048 GO:0005509
Seca2g04049 516 FunFam calcium-dependent protein kinase 13 144 324 - -
Seca2g04049 516 SMART serkin_6 58 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04049 516 Gene3D - 325 490 - -
Seca2g04049 516 CDD STKc_CAMK 57 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04049 Seca-Chr2 122877340 122882342 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04049 1 483 EF-hand Containing Proteins AT5G19450 79.012 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca2g04049 Pkinase 4.6e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04049 K13412 - gmx:100790745 872.848