Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca2g04042 | ATGGGGACTCCTGAATTCCCAGATCTAGGCAAGCATTGTTCTGTCGTTGATTGCAAGCTCCTTGATTTCTTACCCTTCACATGTGATCGTTGTAATCAGGTATATTGTTTGGAGCACCGAAGTTATATTAAGCATAAGTGTACAAAACCCAACAAACTAGATGTCACTGTTGTTATATGTCCACTTTGTGCCAAAGGAGTTCGCCTAATTCCAGATCAAGATCCAAACATAACTTGGGAGAATCATGTTAACATTGACTGTGACCCATCAAATTATGATAAGGTCACAAAGAAGAGAAAATGCCCGGCCCCTGGATGCAGAGAGATCTTGGTATTCTCAAACACAATTAAATGCAGGGATTGCATGACAGACCATTGTTTGAAGCACCGGTTTGGACCTGATCACAAATGTTCTGGGCCAAAAAAGTTGGAAACAAGTTTTTCATTTATGAGTCTTTTAAATAGAAGTAGAAAAGAAGAGGCAAAACCCAATTTAACTTCAACCTCATCATCTAAATGGACTACAAGCTTTCTAAACGTGGCTTCTAATATCCGAGCTTCAGCCGAAGCAGGCATGTCAAAATTGAGTGATGAAATTAACCAAGCATGGCAAACAGCATGGGATGGGGTAGGACAGAGCAGTGGCAATGGAAATTATCAAGGGGAGCAATGCCCTCAGTGTGGTGCGAAATTTTCCTCAGTCACTGCTTTGGTGGATCATGTGCAAAAAGTTCATGAAAGGAGTGGCAACATATCTGGGGCAAAGAAGGTGGCGATTGATGCATGTCCTAGGTGTAGTAAAGGATTTGTAGACCCGATTTCCCTTGTGGAACATGTTGAGAGGGATCACGGTGGTAGTTATAAAGCATAG | 870 | 0.4184 | MGTPEFPDLGKHCSVVDCKLLDFLPFTCDRCNQVYCLEHRSYIKHKCTKPNKLDVTVVICPLCAKGVRLIPDQDPNITWENHVNIDCDPSNYDKVTKKRKCPAPGCREILVFSNTIKCRDCMTDHCLKHRFGPDHKCSGPKKLETSFSFMSLLNRSRKEEAKPNLTSTSSSKWTTSFLNVASNIRASAEAGMSKLSDEINQAWQTAWDGVGQSSGNGNYQGEQCPQCGAKFSSVTALVDHVQKVHERSGNISGAKKVAIDACPRCSKGFVDPISLVEHVERDHGGSYKA. | 290 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca2g04042 | 289 | Pfam | AN1-like Zinc finger | 101 | 141 | IPR000058 | GO:0008270 | |
Seca2g04042 | 289 | Pfam | AN1-like Zinc finger | 13 | 51 | IPR000058 | GO:0008270 | |
Seca2g04042 | 289 | ProSiteProfiles | Zinc finger AN1-type profile. | 95 | 145 | IPR000058 | GO:0008270 | |
Seca2g04042 | 289 | Gene3D | Classic Zinc Finger | 191 | 286 | - | - | |
Seca2g04042 | 289 | PANTHER | ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED | 5 | 248 | - | - | |
Seca2g04042 | 289 | SUPERFAMILY | AN1-like Zinc finger | 4 | 59 | IPR035896 | - | |
Seca2g04042 | 289 | SMART | c2h2final6 | 222 | 245 | IPR013087 | - | |
Seca2g04042 | 289 | SMART | c2h2final6 | 260 | 283 | IPR013087 | - | |
Seca2g04042 | 289 | SUPERFAMILY | AN1-like Zinc finger | 21 | 142 | IPR035896 | - | |
Seca2g04042 | 289 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 222 | 250 | IPR013087 | - | |
Seca2g04042 | 289 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 262 | 283 | IPR013087 | - | |
Seca2g04042 | 289 | Gene3D | - | 2 | 56 | IPR035896 | - | |
Seca2g04042 | 289 | Gene3D | - | 87 | 169 | IPR035896 | - | |
Seca2g04042 | 289 | ProSiteProfiles | Zinc finger AN1-type profile. | 7 | 55 | IPR000058 | GO:0008270 | |
Seca2g04042 | 289 | SMART | AN1_Zf_4 | 101 | 142 | IPR000058 | GO:0008270 | |
Seca2g04042 | 289 | SMART | AN1_Zf_4 | 13 | 52 | IPR000058 | GO:0008270 | |
Seca2g04042 | 289 | Pfam | C2H2-type zinc finger | 223 | 245 | - | - | |
Seca2g04042 | 289 | FunFam | AN1-type zinc finger protein 2B isoform X1 | 3 | 64 | - | - | |
Seca2g04042 | 289 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 224 | 245 | IPR013087 | - | |
Seca2g04042 | 289 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 260 | 288 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca2g04042 | Seca-Chr2 | 122749705 | 122751777 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca2g04042 | 1 | 289 | C2H2 Transcription Factor Family | AT2G41835 | 60.825 | 2.42e-118 | 339 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Seca2g04042 | zf-AN1 | 7.9e-08 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca2g04042 | - | - | gmx:100806459 | 513.072 |