Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04042 ATGGGGACTCCTGAATTCCCAGATCTAGGCAAGCATTGTTCTGTCGTTGATTGCAAGCTCCTTGATTTCTTACCCTTCACATGTGATCGTTGTAATCAGGTATATTGTTTGGAGCACCGAAGTTATATTAAGCATAAGTGTACAAAACCCAACAAACTAGATGTCACTGTTGTTATATGTCCACTTTGTGCCAAAGGAGTTCGCCTAATTCCAGATCAAGATCCAAACATAACTTGGGAGAATCATGTTAACATTGACTGTGACCCATCAAATTATGATAAGGTCACAAAGAAGAGAAAATGCCCGGCCCCTGGATGCAGAGAGATCTTGGTATTCTCAAACACAATTAAATGCAGGGATTGCATGACAGACCATTGTTTGAAGCACCGGTTTGGACCTGATCACAAATGTTCTGGGCCAAAAAAGTTGGAAACAAGTTTTTCATTTATGAGTCTTTTAAATAGAAGTAGAAAAGAAGAGGCAAAACCCAATTTAACTTCAACCTCATCATCTAAATGGACTACAAGCTTTCTAAACGTGGCTTCTAATATCCGAGCTTCAGCCGAAGCAGGCATGTCAAAATTGAGTGATGAAATTAACCAAGCATGGCAAACAGCATGGGATGGGGTAGGACAGAGCAGTGGCAATGGAAATTATCAAGGGGAGCAATGCCCTCAGTGTGGTGCGAAATTTTCCTCAGTCACTGCTTTGGTGGATCATGTGCAAAAAGTTCATGAAAGGAGTGGCAACATATCTGGGGCAAAGAAGGTGGCGATTGATGCATGTCCTAGGTGTAGTAAAGGATTTGTAGACCCGATTTCCCTTGTGGAACATGTTGAGAGGGATCACGGTGGTAGTTATAAAGCATAG 870 0.4184 MGTPEFPDLGKHCSVVDCKLLDFLPFTCDRCNQVYCLEHRSYIKHKCTKPNKLDVTVVICPLCAKGVRLIPDQDPNITWENHVNIDCDPSNYDKVTKKRKCPAPGCREILVFSNTIKCRDCMTDHCLKHRFGPDHKCSGPKKLETSFSFMSLLNRSRKEEAKPNLTSTSSSKWTTSFLNVASNIRASAEAGMSKLSDEINQAWQTAWDGVGQSSGNGNYQGEQCPQCGAKFSSVTALVDHVQKVHERSGNISGAKKVAIDACPRCSKGFVDPISLVEHVERDHGGSYKA. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04042 289 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Seca2g04042 289 Pfam AN1-like Zinc finger 13 51 IPR000058 GO:0008270
Seca2g04042 289 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Seca2g04042 289 Gene3D Classic Zinc Finger 191 286 - -
Seca2g04042 289 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 248 - -
Seca2g04042 289 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Seca2g04042 289 SMART c2h2final6 222 245 IPR013087 -
Seca2g04042 289 SMART c2h2final6 260 283 IPR013087 -
Seca2g04042 289 SUPERFAMILY AN1-like Zinc finger 21 142 IPR035896 -
Seca2g04042 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 222 250 IPR013087 -
Seca2g04042 289 ProSitePatterns Zinc finger C2H2 type domain signature. 262 283 IPR013087 -
Seca2g04042 289 Gene3D - 2 56 IPR035896 -
Seca2g04042 289 Gene3D - 87 169 IPR035896 -
Seca2g04042 289 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Seca2g04042 289 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Seca2g04042 289 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Seca2g04042 289 Pfam C2H2-type zinc finger 223 245 - -
Seca2g04042 289 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Seca2g04042 289 ProSitePatterns Zinc finger C2H2 type domain signature. 224 245 IPR013087 -
Seca2g04042 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 260 288 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04042 Seca-Chr2 122749705 122751777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04042 1 289 C2H2 Transcription Factor Family AT2G41835 60.825 2.42e-118 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca2g04042 zf-AN1 7.9e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04042 - - gmx:100806459 513.072