Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04036 ATGGCTGAGTCATTCCTCTTCTGCATCGCGGAGTCACTGATAGCAAAGCTTGCTTCTCGAGCATATGAAGAAGCTTCTCAGGTGCTGGGTGTATACGACACTCTTCAAGAGTTCACACACACTCTATCATATGTCAAAGCCGTGCTGTTGGATGCTGAGCAAAAGCAAGAGGACAACCAGGAGCTGCAAGAATGGCTGAGGCAGATCAAGCTCGTCCTCTACGACGCAGAAAACGTGCTGGAAGAAGTTGAGAGTGAAAACTTACGGAAGCAAGTGGTCAAAGCGCATGGTAGCAGCACCAAATCCAAGGTAGGTCACTTCTTCTCAAATTCTAATCCACTTGTTATCCGTTATAGGATGGCTCGAAAAATTGAAGAAATCAAGAACAGATTAGACAAGGTTGCATCTGATAGGTATAAATTTGGCCTTCAAATAATTGATGTTGATAATAGACGTGTTGTTGTTCAGAGGAGAGAAATGACATACTCTCGTGTTGATTCAGATGTGATAGGAAGGGAACATGATAAAGAAAAGATCATACAGCTTTTGATTCAGTGTGATGATAATGATAAGAATCTCTCAGTTATCCCTATTGTTGGGATTGGGGGCTTGGGGAAGACCACACTTGCAAAGCTTGTCTTCAATGATAAGAGGATAGATGATTGTTTCATATTGAAGATGTGGGTGTGTGTTTCAGTAGGGTTTAACATTAAGCAACTCATTATTAAAATCATTAATTCTGCTAATGATTTTGCTTCTACTGATGCACCTGTTTACCAACAGAGTTTTAAAGATTTAGATATTGAGCAATTGCAAAATCATCTAACAAAAAAGTTAAAAGGTAAAAAGTTCCTTCTCGTCTTAGATGATCCTGTTTGGGTGGAACTTCTGCAGAAGCTCGATGTGTGGAATGGAAGTCGTGTTGAATGGGTTCAGATGAGGGATTTGATAAAAGCAGGTGCTGTGGGTAGTAAAATCCTAGTGACTACACGTAGTCACAATATTGCTTCCATGATGGGGACTATTCCCTCTCACATCTTAGAAGGCCTTTCTCTGGAGGATTCATTGTCTGTGTTTATCAAGTGGGCATTTAAAGAAGGAGAAGAGGGAAAGTATCCACATTTGATAGAAGGTGACATTTTACCTGCACTTAAGTTAAGCTATGATCAAATGCCATTCTACTTGAAACAATGCTTTGCTTTGTTCTCGCTTTATCCAAAGGATTATACATTTAATAGTTTTGAAGTAACATCCCTTTCGAGGGCACTTGGTCTCCTTCCATCACCAAATGGAAATAAAATATTGAAACATAGTGTGAATCAGTATTTGTATGAACTATTGTCAATATCTTTCATTCAAGATTTTGTTGACTATGGGATTGGCTTTACTTTTAAAATACACTATTTAGTGCATGAGCTTGCTAAGTCTGTTGCATTCGGGGACTGCCTACTTGCAAATTACTCTCTTGAATGTATGGACAGTATAGCCAGAGGTGTCCGGCATCTGTCTTTCCGTAAAGATGTTTGGGATGATGAATTTGGTGTCCAGAGATTACTAGGTGTGAGAACCATACTATTTCCTATTGCTGGAGTTGGAGCCCACAACAAAGTTTTCTTGAATGCATGCATGTCAAGGTGCAAATACTTGCGATTTTTGGACTTAAGTGATTCTACATATAAGACTTTGCCTCAGTCCATTGGCAAGTTGAAACATTTAAGATATTTCAACATTACGAATAATAAAAAAATTAAGAGACTTCCAAATTCTATCTGCAACCTCCTAAAGTTGGAAGTATTGATACTTATTGGATGTACACAGCTTGAAAAACTGCCTAAAGATTTAAGAAAATTGACCAGTCTCCAACATTTGGAGATAACGACAAAGCTATGTGTTTTGCCGGAAGATGAGATTGCAAACTTGAGCTCTCTTAGGACCCTCAGAATCGAATTTTGCAACAATCTGGAGTCTTTGTTTGGAGGGATAAAACTCCCTAAGCTTAGAGTATTGCGTGTTGCTAATTGCATGACTCTAAAGTCTCTGTCACTCAATAGTGAACATTTTCCTGCATTAGAGACTTTGTTTGTTGACAATTGTGACATGTTGGAATTATCACAGGGGCATGAGAAGCAAAACTCCAATTTGAGGTTGAAGGTTTTAACTATTGTTTCTTTGCCACAGTTGGTGACACTGCCGCATTGGCTTCAAGGGTCTGTGAAAACATTACAATTCTTATCAATTTCAAGTTGCAACAATCTTGTGGCACTTCCTGAGTGGCTTTCAGCTATGAATTGTCTGAAAACACTTCGAATCACAAATTGTTCTAATATGTCGTCTCTCCCTGATAATATCCATCACCTCACCACGCTTGAACGATTAGAAATTGATGATTATCCTGAATCACTTAGAAAATCCCAGCCGCAAGTTGGAGAGTCTTCACTTTTCACAGTTAGCACTTAA 2457 0.3891 MAESFLFCIAESLIAKLASRAYEEASQVLGVYDTLQEFTHTLSYVKAVLLDAEQKQEDNQELQEWLRQIKLVLYDAENVLEEVESENLRKQVVKAHGSSTKSKVGHFFSNSNPLVIRYRMARKIEEIKNRLDKVASDRYKFGLQIIDVDNRRVVVQRREMTYSRVDSDVIGREHDKEKIIQLLIQCDDNDKNLSVIPIVGIGGLGKTTLAKLVFNDKRIDDCFILKMWVCVSVGFNIKQLIIKIINSANDFASTDAPVYQQSFKDLDIEQLQNHLTKKLKGKKFLLVLDDPVWVELLQKLDVWNGSRVEWVQMRDLIKAGAVGSKILVTTRSHNIASMMGTIPSHILEGLSLEDSLSVFIKWAFKEGEEGKYPHLIEGDILPALKLSYDQMPFYLKQCFALFSLYPKDYTFNSFEVTSLSRALGLLPSPNGNKILKHSVNQYLYELLSISFIQDFVDYGIGFTFKIHYLVHELAKSVAFGDCLLANYSLECMDSIARGVRHLSFRKDVWDDEFGVQRLLGVRTILFPIAGVGAHNKVFLNACMSRCKYLRFLDLSDSTYKTLPQSIGKLKHLRYFNITNNKKIKRLPNSICNLLKLEVLILIGCTQLEKLPKDLRKLTSLQHLEITTKLCVLPEDEIANLSSLRTLRIEFCNNLESLFGGIKLPKLRVLRVANCMTLKSLSLNSEHFPALETLFVDNCDMLELSQGHEKQNSNLRLKVLTIVSLPQLVTLPHWLQGSVKTLQFLSISSCNNLVALPEWLSAMNCLKTLRITNCSNMSSLPDNIHHLTTLERLEIDDYPESLRKSQPQVGESSLFTVST. 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04036 818 Pfam Rx N-terminal domain 11 99 IPR041118 -
Seca2g04036 818 PANTHER DISEASE RESISTANCE PROTEIN RP 63 727 IPR044974 GO:0006952
Seca2g04036 818 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 401 IPR027417 -
Seca2g04036 818 PRINTS Disease resistance protein signature 278 292 - -
Seca2g04036 818 PRINTS Disease resistance protein signature 638 654 - -
Seca2g04036 818 PRINTS Disease resistance protein signature 195 210 - -
Seca2g04036 818 Coils Coil 66 86 - -
Seca2g04036 818 Gene3D Ribonuclease Inhibitor 530 812 IPR032675 -
Seca2g04036 818 Gene3D - 154 343 IPR027417 -
Seca2g04036 818 Gene3D - 382 477 IPR036388 -
Seca2g04036 818 Pfam NB-ARC domain 172 367 IPR002182 GO:0043531
Seca2g04036 818 CDD RX-CC_like 2 136 IPR038005 -
Seca2g04036 818 SUPERFAMILY L domain-like 466 797 - -
Seca2g04036 818 Gene3D - 10 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04036 Seca-Chr2 122662392 122665216 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04036 540 796 Receptor kinase-like Gene Family AT3G11080 23.077 2.26e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04036 - - tpra:123888340 1001.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04036 2 122662392 122665216 Seca2g04036 2 122662392 122665216 ECH