Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04022 ATGGATGACCACTGTGATTCACAAACTCCATTAGATATTATTCCTAGTGGGTGTGAGGAAAACTTGACCTCACATTCACTTCAAGAATGTAAGCGTGAAATCATTGATTTCAATGAAAATGATGATGATGATTTTCCTGTGCCACAGGCTGGGATGGTATTTAGTTCAGAGGATAAGGCCAGATCCTATTACACATCTTATGCCAACCGATTAGGCTTCCGGATCATGACTAGAAGCTCAAAAAAGAGACATGATGGCAGAGTTAAGTATTTAATACTTCAATGTACTGGAGGAGTTAGGAGATGTTATAATGGAATAAGTATTTCTACTGCATCATGGAAACAGAATTGTGAAGCCAGGATCAATGTCTCATTGTGTAAAGATGGAATCTACCAAATTCGCAAAGTTGTGCTCAGTCACAATCATGAAGTGAGGTGTCCAGTACTACTCTTAAAGGATATTGAAATGTGTGGTGAAAGGGCGTTGGATCGAAAAAATATTGACATGTGTGTTAAGAGGATATCTGAATCTGATCAAAATAATTGCAAAAACAAGCTTCAGAAAGAAAGGCATTTGATCGGGGAGGATGGAGATGGTGAAGCCCTGCAAAAGTATTTGGCGAGGATGCAAAAACAGGATAGCAACTTCTTCTATGCGATTGACTTGGATGATTTCTTCAACGTGAGAAATATATTTTGGGCTGATGGCAGGAGTAAAGCTGCATATGAATCATTTGGTGATGTGGTGACGCTTGATACTACATATCTCTTTAATCAGTACAAAGTGCCACTTGTAACTTTTGTTGGAGTAAACCATCATGGGCAATCTGTACTTTTTGGTTGTGGGTTGTTGCCGCGTCAAGACTTGGAGTCATTTGTTTGGCTGTTTCAATCATTGCTAAATTGCATGTCTGGTGTACCCCCACGAGGAATTATAACAGATCATTGCAATGCCATGCTAAAAGCGATTGAAACTGTGTTCCCCTCCACTCGACATTGTTGGTGTTTATCGAATATAATGAAAGAGCTTCCCCAAAAAATTCATGGATATGAGAAGTACAAGTCAATAGGAGATCATTTGCAGACTGTTGTATATGATACACTCACAACAGATGAATTTGAGAGGAATTGGGAGAAGATTATGAAGGATTTTGGCCTTGAAGAGGATAAATGGTTGAAGGAGTTGTTCCTTGAGAGACATCGGTGGGTTCCTTCTTTTGTAAAAGGTGATTTTTGGGCTGGAATGTCTGTTAACCAACCTACTGAAAGCATGCATGCATTTTTTGATGGATATGTAAACCAGCACACAACTTTGAAGCTATTTGTTGATCAGTATGATAGTGCTTTGCAATACAAAGCAGAGAAGGAGTATATAGCTGACGTGCATTCATCTTGTAGCGTTCAGTCTTGTGCTACCAAATCTGCAATTGAACGGCAGTTTCAATCTGCATACACAAATGCAAAATTTCAGGAGGTTCAAGATGAGTTTGTTGGAAAGGCTGATTGTAATGTTTCTGTTGCCTGTGACAATGGCTCTATTTGTCACTATAAAGTCATTGAGGATGTGATAATAGAGGATAAGCCTAAGGAATGTGTGGTTGAAGTCACATATAACAGGGTAACTCATGATGTTAATTGCAATTGCCGCTCGTTTGAGTTCAGAGGGATACTTTGTAGGCACTCACTTGCCGTACTGTCACAAGAGAGAGTGAAGGAGGTCCCTTGTAAATATATATTAGATAGGTGGAGGAAAAATATGAAGAGGAGGTATGTTTATGTCAAAACCAGCTATGGTGTTCAGCATCTTAAACCTCATATGCAAAGGCTTGAATTGTTATGCAATCAATTCAATAGTGTTGCTGATGCCGCTGCTGAATTTGAGGAAACAAGTTCTTTTGTGAAGGTTACCCTTTGTAACTTGAAGGAGAAACTTGAAACGTGGGCAACCCATCTGAGAAATTCATCTCAGGTGGATGTAGAGGAAGCTCAGTACATAAGTTCACCCGATGGTGTTTAG 2016 0.3943 MDDHCDSQTPLDIIPSGCEENLTSHSLQECKREIIDFNENDDDDFPVPQAGMVFSSEDKARSYYTSYANRLGFRIMTRSSKKRHDGRVKYLILQCTGGVRRCYNGISISTASWKQNCEARINVSLCKDGIYQIRKVVLSHNHEVRCPVLLLKDIEMCGERALDRKNIDMCVKRISESDQNNCKNKLQKERHLIGEDGDGEALQKYLARMQKQDSNFFYAIDLDDFFNVRNIFWADGRSKAAYESFGDVVTLDTTYLFNQYKVPLVTFVGVNHHGQSVLFGCGLLPRQDLESFVWLFQSLLNCMSGVPPRGIITDHCNAMLKAIETVFPSTRHCWCLSNIMKELPQKIHGYEKYKSIGDHLQTVVYDTLTTDEFERNWEKIMKDFGLEEDKWLKELFLERHRWVPSFVKGDFWAGMSVNQPTESMHAFFDGYVNQHTTLKLFVDQYDSALQYKAEKEYIADVHSSCSVQSCATKSAIERQFQSAYTNAKFQEVQDEFVGKADCNVSVACDNGSICHYKVIEDVIIEDKPKECVVEVTYNRVTHDVNCNCRSFEFRGILCRHSLAVLSQERVKEVPCKYILDRWRKNMKRRYVYVKTSYGVQHLKPHMQRLELLCNQFNSVADAAAEFEETSSFVKVTLCNLKEKLETWATHLRNSSQVDVEEAQYISSPDGV. 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04022 671 Pfam SWIM zinc finger 545 566 IPR007527 GO:0008270
Seca2g04022 671 SMART 26again6 544 571 IPR006564 GO:0008270
Seca2g04022 671 ProSiteProfiles Zinc finger SWIM-type profile. 531 569 IPR007527 GO:0008270
Seca2g04022 671 Pfam FAR1 DNA-binding domain 62 144 IPR004330 -
Seca2g04022 671 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 38 646 IPR031052 GO:0006355
Seca2g04022 671 Pfam MULE transposase domain 248 341 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04022 Seca-Chr2 122536594 122539606 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca2g04022 MULE 1.2e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04022 - K17604 gmx:102660547 946.421