Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04011 ATGGCTTCGTCTTCCTCTGATCCCGGCAAGCCCGCGGAGACTTCGGAAGCAGCGATGGCGAACGACCAGCTTTTACTGTACCGAGGGTTGAAGAAAGCGAAGAAGGAGAGAGGTTGCACTGCCAAAGAGCGCATCAGTAAAATGCCTCCTTGTGCCGCTGGCAAACGCAGCTCCATCTACCGCGGTGTCACCAGACATAGATGGACTGGTCGTTATGAAGCGCATCTTTGGGATAAAAGTACATGGAACCAAAATCAGAATAAGAAAGGAAAACAAGGGGCGTATGATGACGAGGAAGCAGCGGCTAGAGCGTATGACCTTGCTGCTCTGAAATACTGGGGTCCTGGGACTCTTATTAACTTTCCAGTAAGACAAATTGCTTGCATGATTGCGTTGATTTTTGAAGGTTGCGTTAGTTGGGAGATGCTGTCTGGTTTTATGTTTCTCCTTCTCCTATTGCTATATGAAAATGGTGTCCACATATTTTTCTGCTTTATATTTTGTATCAAATGGTGGTACGGAAATGGCTCGAATTTGACATTAGAACCCAGCCACTTACTAGTGGAACTGCGAGTTGGTGAGTGA 585 0.4667 MASSSSDPGKPAETSEAAMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDDEEAAARAYDLAALKYWGPGTLINFPVRQIACMIALIFEGCVSWEMLSGFMFLLLLLLYENGVHIFFCFIFCIKWWYGNGSNLTLEPSHLLVELRVGE. 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04011 194 SMART rav1_2 59 128 IPR001471 GO:0003700|GO:0006355
Seca2g04011 194 FunFam AP2-like ethylene-responsive transcription factor 58 124 - -
Seca2g04011 194 Gene3D AP2/ERF domain 59 124 IPR036955 GO:0003700|GO:0006355
Seca2g04011 194 SUPERFAMILY DNA-binding domain 58 123 IPR016177 GO:0003677
Seca2g04011 194 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 22 124 - -
Seca2g04011 194 ProSiteProfiles AP2/ERF domain profile. 59 122 IPR001471 GO:0003700|GO:0006355
Seca2g04011 194 Pfam AP2 domain 59 114 IPR001471 GO:0003700|GO:0006355
Seca2g04011 194 PRINTS Ethylene responsive element binding protein signature 60 71 IPR001471 GO:0003700|GO:0006355
Seca2g04011 194 PRINTS Ethylene responsive element binding protein signature 104 124 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04011 Seca-Chr2 122287717 122289148 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04011 20 123 AP2-EREBP Transcription Factor Family AT2G41710 93.458 5.57e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca2g04011 AP2 5.8e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04011 K09285 - gmx:100814117 231.106