Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04008 ATGGGAACTGCGTGGAGGCAGTTGAAGGTTATGCTCAGGAAGAACTGGCTCCTCAAAATTCGTCACCCTTTCGTTACTGCCGCTGAGATTTTGCTCCCCACGATCGTGTTGTTGCTATTAGTAGCTGTAAGGACACGGGTGGATACACAAATTCATCCAGCTCAATCGCATATTCAAAAAGATATGTTTGTAGAAGTGGGGAAAGGTATATCCCCTAACTTCCAAAAAGTTTTGGAATCCTTGTTGGATAAGGGAGAGTATTTAGCTTTTGCACCGGATACCAATGAGACGAAGCTGATGATAGACATCGTGTCAATAAAATTTCCGCTCTTGAAGCTTGTTAGTAGAGTATACAAAGATGAGGTAGAGTTGGAAACCTACATCAGGTCATCTGCTTATGGTACCTGCAATCAAGTAAGAAATTGTTCAAATCCCAAAATTAAAGGAGCGGTTGTATTTTATGAACAAGGTCCTCAGTCATTTGATTATAGCATACGCCTCAATCATACATGGGCTTTCTCCGGTTTTCCAGACGTTACAACCATAATGGATACAAATGGCCCTTTTCTTAATGACTTGGAACTTGGTGTTACTGCTGTACCAACAATGCAATACAGCTTCAGTGGATTTTTGACTCTCCAGCAAATGGTTGACTCATTCATAATATTAATAGCTCAGCAGTCTGACTTGAATTCTAGTGCTGAAAGTGCAAAGCTTCCTCTTCCAGGCTTCTATGACACTGATTTCTCCTCGAAAATTCCATGGACTCAGTTTAACCCTGCTCACATACGAATAGCTCCATTTCCCACTCGAGAGTACACTGATGACCAGTTCCAGTCAATCATAAAGAAAGTCATGGGAATATTGTACTTATTGGGGTTTCTCTATCCAATTTCTCGCCTGATTAGTTATTCTGTGTTTGAGAAGGAACAGAAGATTAAAGAGGGACTCTATATGATGGGCCTGAAAGATGGTATATTTCATCTCTCTTGGTTTATTACTTATGCTTTGCAGTTTGCAATTTCCTCTGGGGTCATTACAGCTTGCACCATGGATAACTTATTCAAGTATAGCGATAAGACACTGGTGTTTGCATACTTCTTCATTTTTGGGCTTAGTGCAATCATGCTGTCATTTTTTATATCAACGTTTTTCAAACGGGCCAAAACAGCTATAGCTGTTGGAACCCTGTGTTTTCTTGGTGCCTTTTTCCCTTATTACACTGTCAATGATGAGGGAGTTTCTATGATCTTGAAGGTTATTGCTTCTTTGCTTTCACCTACGGCCTTTGCTCTTGGTTCGGTTAACTTTGCTGATTATGAACGTGCTCATGTTGGACTTCGTTGGAGCAACATATGGCGGGAATCATCTGGAGTGAACTTTTTAGCGTGTCTCCTGATGATGATACTTGATACAGTGCTATATTGTGCAATTGGACTGTATTTTGATAAGGTTCTTCCGAGGGAGTATGGACTGCGATATCCATGGAGCTTTATTTTCCAAAAGGACTTTTGGAGGAAGAAAAAAATTGTAACACATTGTTCCTCTGGTTTTAAAGTTAAAATTGCTGGTAAGAATTCTGAGTCAGAACCCGCTATAGAAGCAATAAGCTTAGACATGAAACAACAGGAGCTTGATGGCAGGTGCATTCAAATCAGGAATTTGCATAAAGTGTATGCTACTAAAAAAGGAGATTGCTGTGCTGTTAACTCATTACAGCTGACATTGTATGAAAATCAGATTCTTGCTCTTCTAGGACATAATGGAGCTGGGAAAAGCACAACAATCTCAATGCTTGTTGGTCTTCTTCCTCCTACTTCTGGGGATGCTTTGGTTTTTGGAAAGAACATTGTATCGGATATTGATGAGATACGGAAGGTTTTGGGTGTGTGCCCACAACATGATATACTCTTTCCTGAATTGACTGTGAGGGAGCATTTAGAACTATTTGCCACATTAAAGGGTGTGGAGGAAGACTCGCTGGAGGGTGTTGTCTCTAATATGGCTGATGAGGTGGGCCTGGCTGATAAAATTAACAGTCTTGTGAGAGCTCTTTCTGGTGGCATGAAAAGGAAATTGTCTCTTGGAATTGCATTGATTGGAAACAGTAAGGTTATTGTTCTTGACGAACCTACAAGTGGAATGGATCCATACTCAATGCGCTTGACTTGGCAGTTAATAAAAAAAATTAAAAAGGGCAGGATAATTTTGCTAACAACACATTCTATGGATGAAGCAGATGAACTAGGTGACCGGATAGCTATCATGGCCAATGGTTCTCTGAAATGCTGTGGAAGGTTAGTTTCGTTTTCATTTGTTCTAATTTTCTCATATTGTTATACCTTGAAGCAATTGTGA 2358 0.4012 MGTAWRQLKVMLRKNWLLKIRHPFVTAAEILLPTIVLLLLVAVRTRVDTQIHPAQSHIQKDMFVEVGKGISPNFQKVLESLLDKGEYLAFAPDTNETKLMIDIVSIKFPLLKLVSRVYKDEVELETYIRSSAYGTCNQVRNCSNPKIKGAVVFYEQGPQSFDYSIRLNHTWAFSGFPDVTTIMDTNGPFLNDLELGVTAVPTMQYSFSGFLTLQQMVDSFIILIAQQSDLNSSAESAKLPLPGFYDTDFSSKIPWTQFNPAHIRIAPFPTREYTDDQFQSIIKKVMGILYLLGFLYPISRLISYSVFEKEQKIKEGLYMMGLKDGIFHLSWFITYALQFAISSGVITACTMDNLFKYSDKTLVFAYFFIFGLSAIMLSFFISTFFKRAKTAIAVGTLCFLGAFFPYYTVNDEGVSMILKVIASLLSPTAFALGSVNFADYERAHVGLRWSNIWRESSGVNFLACLLMMILDTVLYCAIGLYFDKVLPREYGLRYPWSFIFQKDFWRKKKIVTHCSSGFKVKIAGKNSESEPAIEAISLDMKQQELDGRCIQIRNLHKVYATKKGDCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLLPPTSGDALVFGKNIVSDIDEIRKVLGVCPQHDILFPELTVREHLELFATLKGVEEDSLEGVVSNMADEVGLADKINSLVRALSGGMKRKLSLGIALIGNSKVIVLDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGRLVSFSFVLIFSYCYTLKQL. 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04008 785 Pfam ABC-2 family transporter protein 212 481 IPR013525 GO:0016020|GO:0140359
Seca2g04008 785 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 550 783 IPR003439 GO:0005524
Seca2g04008 785 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 550 766 IPR027417 -
Seca2g04008 785 Pfam ABC transporter 570 713 IPR003439 GO:0005524
Seca2g04008 785 FunFam ATP-binding cassette sub-family A member 12 541 784 - -
Seca2g04008 785 SMART AAA_5 578 760 IPR003593 GO:0016887
Seca2g04008 785 CDD ABC_subfamily_A 550 765 - -
Seca2g04008 785 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 542 767 IPR026082 GO:0016020|GO:0055085|GO:0140359
Seca2g04008 785 ProSitePatterns ABC transporters family signature. 685 699 IPR017871 GO:0005524|GO:0016887
Seca2g04008 785 Gene3D - 536 771 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04008 Seca-Chr2 122141221 122169233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04008 525 765 Calmodulin-binding Proteins AT2G36910 24.291 5.65e-15 77.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04008 2 122141221 122169233 Seca2g04008 2 122141221 122169233 ECH