Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04007 ATGGCATCCTCATCAGCCTTTGAGAGGATGTTTAGGGAAATTGAAGGTTGCATGAAAAAGCCAATCTCGAACATGGAAATAAGTGGAAATGGTGACAAAGACAGTCATGGTATTGAAAGCTATGGTATATCTGTAACAACCCTGGAGGAGGTTTTCTTGAGAGTTGCAGGATGTGACTATGACGAAGTTGAATGCTTTGAAGAGAATAAACCCTCCCTTATATCAGATTCTGTGCCTTCTCTCCCTTATAATGACTGTCCATCAACAAAAATATGTTACCTTAAAGTGTTTGGAAATTATAAGAAGATTCTTGGCTTCATGTCTACCATGCTGGGAAGAGCTTGTCACTTAATTTTTGCTACTGTTATTAGTTTCATCAACTTCTTGGGTATGCAGTGTTGTAGCTGTTGTCTCCTTACTAGGTCAACATTTTGGCAACATTCTAAAGCTTTATTCATTAAGAGAGCAATATCTGCTCGGAGAGATCACAAAACGATTATTTTCCAGCTAATGATTCCTGCTGTCTTCTTGTTTATTGGTCTTCTATTTCTTGAGCTCAAGCCACATCCAGATCAGCAGTCACTGACGCTTTCAACTTCTTATTTTAATCCTCTGTTGAGTGGTGGGGGTGGGGGAGGTCCAATTCCTTTTAATCTATCTCTTCCAATTGCTGAAAAGGTAGCACAAAATGTCAAAGGAGGGTGGATTCAAAGGTGCAAACCAAGCTCATACAAGTTCCCCAATTCAGAAAAGGCATTAGCTGATGCAGTGGAAGCAGCAGGCCCAACTCTGGGACCTGCTCTACTTTCAATGAGTGAATATTTGATGTCTAGCTTTAATGAATCCTACCAATCTAGGTATGGGGCAATTGTGATGGATGATCAGAATAATGATGGAAGTTTAGGCTACACTGTGTTACACAACTTTTCTTGTCAACATGCTGCTCCCACCTTTATCAATTTGATGAATTCTGCAATTCTTAGGCTTGCTACTCATAACATGAATATGACAATTCAGACACGCAACCACCCTCTACCAATGACACAAAGTCAGCGCTTGCAACGTCATGACCTGGATGCCTTCTCTGCTGCTATCATTGTCAATATTGCCTTTTCTTTTATCCCTGCCTCATTTGCTGTTTCAATTGTCAAGGAACGTGAAGTGAAAGCGAAGCACCAACAACTAATCAGCGGGGTTTCAGTCCTTTCATATTGGGCTTCTACATTTATGTGGGACTTTGTGAGCTTCTTGTTTCCGGCCTCTTTTGCCTTTGTTGGAGGGGTTTCTTTGTTACCAACGATCGTCATGCTTTTGGAATATGGACTTGCAATTGCATCGTCAACATATTGCCTTACATTTTTCTTTTTCGATCATACCATGGCTCAGAACGTGGTTCTCCTGGTCCACTTTTTTACTGGATTGATATTGATGGTTATCTCATTCATTATGGGACTCATCCCATCCACAATAAGCGCCAATTCTTTTCTTAAGAATTTTTTCAGAATATCTCCTGGATTTTGTTTTGCTGATGGTCTTGCTTCATTAGCTCTTCTGCGGCAAGGAATGAAAGATAAAACAAGTGATGGAGTGTTTGATTGGAATGTTACTGGTGCTTCCATTTGTTATCTTGCTGTTGAGAGCTTTAGTTACTTTTTGTTGACACTCGCACTTGAAATTTTTCCTTCTCTCCAATTGACTTCATTCATGATAAAGAAATGGTGGCGGAAAATGAATATCTTCCAGCATAATACTACTTATCTGGAACCTCTATTAGAATCAACCCCAGAAAATGTTGTTATGGACCTCGATGAAGATGTAGATGTGAAAACAGAAAGAAACAGAGTACTTTCAGGTTCCCTTGACAATTCTATTATCTACTTGCGCAATCTTCGTAAGGTGTATTCTGAAGGAAAGTATCATGGGAAAAAAGTTGCTGTGGATTCATTAACCTTCTCAGTTCAGGAAGGAGAATGTTTTGGCTTTTTAGGGACAAATGGAGCTGGAAAGACAACGACACTTTCTATGCTATGTGGGGAAGAATCTCCTTCTGATGGGACAGCTTTTATTTTTGGCAAAGATATATGCTCCCATCCCAAGGCTGCCTGTAAATATATTGGATATTGTCCACAGTTTGATGCTCTACTGGAATTCTTGACTGTCCAAGAGCATCTGGAGCTTTATGCTAGAATAAAAGGTGTTCCAGACTGCACAATAGACAATGTTGTTATGGAAAAGTTGGTGGAGTTTGACTTATTGAAGCATGCTAATAAACCATCATTTTCACTTAGTGGAGGGAATAAAAGGAAACTTTCTGTTGCAATTGCAATGATTGGAGATCCTCCTATTGTCATTCTTGATGAGCCATCCACAGGTATGGATCCCATTGCCAAAAGGTTCATGTGGGATGTAATATCTAGAATCTCAACTAGACGAGGAAAGACTGCGGTGATTCTTACTACCCACAGCATGAATGAAGCTCAAGCCTTATGTACGAGAATAGGGATTATGGTTGGTGGACGCCTAAGATGCATTGGAAGTCCACAACATCTAAAAACAAGATTTGGGAATCATCTAGAACTAGAGGTGAAACCTACTGAAGTGAGCTCTGTGGACTTACAAGCACTCTGCCAAGCTATTCAGGAAATACTTTTGGATGTCCCTTCTCAACCTAGAAGCTTACTTAACGACCTTGAAATTTGCATTGGGGGCATTGACTCTACCTCAGGAAATACCTCTGTTGCAGAGATTAGCTTGACACGAGAAATGATAGGCTTAATTGGACGCTGGCTTGGTAATGAAGAAAGAGTGAAGACTCTAATCTCTTCTACACCTGTCTATGATGGAGCTTCTCATGAACAGTTATCAGAACAATTATTTCGAGATGGTAGTATTCCATTGCCAGTATTTTCTGAGTGGTGGTTGTCCAAAGAAAAATTCTCAGAAATTGATTCATTTATTCTCTCGTCATTTCGGGGAGCAAGATGTCAAGGGTACAATGGTTTGAGCATCAGATACCAGTTACCATATGATGAGGATTTTTCCCTGGCAGATGTTTTTGGACTTCTTGAAGGAAACAGAAATAGAATAGGGATTGCAGAGTACAGCATCAGCCAATCAACTCTGGAGACAATATTTAATCATTTTGCAGCTAATTCATAA 3159 0.3992 MASSSAFERMFREIEGCMKKPISNMEISGNGDKDSHGIESYGISVTTLEEVFLRVAGCDYDEVECFEENKPSLISDSVPSLPYNDCPSTKICYLKVFGNYKKILGFMSTMLGRACHLIFATVISFINFLGMQCCSCCLLTRSTFWQHSKALFIKRAISARRDHKTIIFQLMIPAVFLFIGLLFLELKPHPDQQSLTLSTSYFNPLLSGGGGGGPIPFNLSLPIAEKVAQNVKGGWIQRCKPSSYKFPNSEKALADAVEAAGPTLGPALLSMSEYLMSSFNESYQSRYGAIVMDDQNNDGSLGYTVLHNFSCQHAAPTFINLMNSAILRLATHNMNMTIQTRNHPLPMTQSQRLQRHDLDAFSAAIIVNIAFSFIPASFAVSIVKEREVKAKHQQLISGVSVLSYWASTFMWDFVSFLFPASFAFVGGVSLLPTIVMLLEYGLAIASSTYCLTFFFFDHTMAQNVVLLVHFFTGLILMVISFIMGLIPSTISANSFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTGASICYLAVESFSYFLLTLALEIFPSLQLTSFMIKKWWRKMNIFQHNTTYLEPLLESTPENVVMDLDEDVDVKTERNRVLSGSLDNSIIYLRNLRKVYSEGKYHGKKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEESPSDGTAFIFGKDICSHPKAACKYIGYCPQFDALLEFLTVQEHLELYARIKGVPDCTIDNVVMEKLVEFDLLKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPTEVSSVDLQALCQAIQEILLDVPSQPRSLLNDLEICIGGIDSTSGNTSVAEISLTREMIGLIGRWLGNEERVKTLISSTPVYDGASHEQLSEQLFRDGSIPLPVFSEWWLSKEKFSEIDSFILSSFRGARCQGYNGLSIRYQLPYDEDFSLADVFGLLEGNRNRIGIAEYSISQSTLETIFNHFAANS. 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04007 1052 SMART AAA_5 655 842 IPR003593 GO:0016887
Seca2g04007 1052 FunFam ABC transporter A family member 1 614 868 - -
Seca2g04007 1052 CDD ABC_subfamily_A 625 851 - -
Seca2g04007 1052 ProSitePatterns ABC transporters family signature. 762 776 IPR017871 GO:0005524|GO:0016887
Seca2g04007 1052 Gene3D - 617 867 IPR027417 -
Seca2g04007 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 624 854 IPR027417 -
Seca2g04007 1052 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 625 863 IPR003439 GO:0005524
Seca2g04007 1052 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 270 562 IPR026082 GO:0016020|GO:0055085|GO:0140359
Seca2g04007 1052 Pfam ABC transporter 647 789 IPR003439 GO:0005524
Seca2g04007 1052 Pfam ABC-2 family transporter protein 164 555 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04007 Seca-Chr2 122105215 122128686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04007 646 856 Calmodulin-binding Proteins AT2G36910 23.009 1.19e-09 60.8