Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04006 ATGGAGGGATCAACAATAAGTGATCATAAGGGGTTGTTGGAATGTGCAAGAAAGTGCAGTCCACCACCGTTCTTGTTGAAGACATACATGCTTGTGGAGGATCCGGCCACCGACGATGTGATATCATGGAATGCTCAAGGAACGGCGTTTGTGGTGTGGCAGCCGGCGGAGTTTGCTCGTGATCTCCTTCCAACTCTCTTCAAACACAGCAATTTCTCAAGCTTTGTGCGCCAGCTTAATACCTATGTAGGGTTTCGTAAAGTTGCAACAAACAGATGGGAATTTTGCAACGAGAGATTCAGGAAAGGTGAAAGAGAAGTTCTATCCGAAATTCGGCGAAGAAAAGCTTGGAGCAGCAAACAGAAACAACAAGCCACACAGCAAGTTGACTCTGATGAAGATCAAAGGTCATCATCAACCTCATCATCTTCGGGTAATCTTGTGGATGAAAACAAGCGACTCAAGAAAGAGAATGGGGTTTTGAATTCTGAGCTGACAAATATGAAAAGGAAGTGTAAGGAACTTCTTGATTTGGTTGCCAAATATTCTTCTTCTTCACAACATGCAAAGCCAAAGGATGAGGAAGAATTAGAAGATGAAAGGCCAATGCTGTTTGGTGTGAGATTAGATGTTGAAGGAGAGAGGGGAATCAAGAGGAAGAATAGATCACCTGAGATTAATGAAAGCGCAAGCATTTTGCTGTCTCAGTCATGCAAATAG 720 0.4319 MEGSTISDHKGLLECARKCSPPPFLLKTYMLVEDPATDDVISWNAQGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYVGFRKVATNRWEFCNERFRKGEREVLSEIRRRKAWSSKQKQQATQQVDSDEDQRSSSTSSSSGNLVDENKRLKKENGVLNSELTNMKRKCKELLDLVAKYSSSSQHAKPKDEEELEDERPMLFGVRLDVEGERGIKRKNRSPEINESASILLSQSCK. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04006 239 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 184 IPR027725 -
Seca2g04006 239 Coils Coil 151 171 - -
Seca2g04006 239 MobiDBLite consensus disorder prediction 220 239 - -
Seca2g04006 239 FunFam Heat stress transcription factor B-4 16 115 - -
Seca2g04006 239 Pfam HSF-type DNA-binding 24 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca2g04006 239 MobiDBLite consensus disorder prediction 118 155 - -
Seca2g04006 239 SMART hsfneu3 20 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca2g04006 239 MobiDBLite consensus disorder prediction 120 148 - -
Seca2g04006 239 Gene3D - 16 115 IPR036388 -
Seca2g04006 239 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca2g04006 239 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca2g04006 239 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca2g04006 239 SUPERFAMILY "Winged helix" DNA-binding domain 20 114 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04006 Seca-Chr2 122099207 122102754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04006 21 182 HSF AT2G41690 61.326 9.94e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca2g04006 HSF_DNA-bind 4.8e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04006 K09419 - gmx:100802739 335.495