Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03990 ATGAAGATTAAGGTTGTGGCTCCACCAGAGATAAAGTATAGTGTCTGGATTGGAGGATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATCAAAAAAGCACTCCGCAGTATCAAAGTTGAAGTAACACATCATGGAAATATGAGAAGAAAATATCGTATCTCTGGCCTGAGATCGCAAGCTACTAGAGAGTTGACATTCCCTGTGGATGAGAGGGGAACAATGAAGTCAGTTGTTGAGTATTTCTATGAGACATATGGTTTTGTAATTCAACATACTCAGTAG 285 0.4105 MKIKVVAPPEIKYSVWIGGSILASLSTFQQIKKALRSIKVEVTHHGNMRRKYRISGLRSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQ. 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03990 94 Gene3D paz domain 22 94 - -
Seca2g03990 94 ProSiteProfiles PAZ domain profile. 31 94 IPR003100 GO:0005515
Seca2g03990 94 Pfam PAZ domain 28 93 IPR003100 GO:0005515
Seca2g03990 94 SUPERFAMILY Actin-like ATPase domain 1 31 IPR043129 -
Seca2g03990 94 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 29 93 - -
Seca2g03990 94 Pfam Actin 1 31 IPR004000 -
Seca2g03990 94 CDD PAZ_argonaute_like 24 92 - -
Seca2g03990 94 SUPERFAMILY PAZ domain 28 93 IPR036085 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03990 Seca-Chr2 121741755 121744982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03990 30 94 Eukaryotic Initiation Factors Gene Family AT1G48410 83.077 1.67e-31 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03990 K11593 - gmx:100780375 124.79