Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03965 ATGGAGAGCCTCCTAAAAGATTTCGAGGTGGAGCACAAGAATCCGTCCGTCGAAGCTCTTAGGAGATGGAGATCTGCCGTCAGTTTCATCGTCAAGAACCGCCGCAGACGCTTCCGTATGGTCGCCGATCTCGACAAGCGCTCCGAAGCAGAACAGATTAAGCAGGGAATCAAGGAAAAAATTCGGATTGCTCTCTATGTTCAGAAGGCAGCATTGCAATTTATTGATGCTGGTAATCGAGTTGAATACGAGCTATCACAAGAAGCAAGAGAAGCTGGTTTTGATATTCATCCAGACGAGATTGCTTCTATTGTTCGTGGCCATAATTTGAAGAACTTGGGTAATAAGGGTGGAGTAGAAGCCATTGCAAGGAAACTGTCAGTCTCCGTGGATGAAGGTGTCAGTGAAACGAGTATAAATTGCAGACAACAGATCTATGGGGTCAACCGTTATACAGAGAAACCTCCAAGGTCATTCCTGATGTTTGTGTGGGATGCACTGCAGGACTTAACTCTAATAATTCTAATGGTTTGTGCTGTAGTTTCTATAGGTGTAGGGATGGCCACTGAAGGGTGGCCAAAGGGAATGTATGATGGTGTGGGAATCATACTCAGTATATTCTTGGTAGTCATTGTTACTGCTGTCAGTGACTACAAACAATCCCTGCAGTTTAGGGATTTGGACAAAGAAAAGAAAAAGATCTTTGTTCAGGTCACCAGGGATGGAAAAAGACAGAGGATCTCAATTTATGATATAGTAGTTGGTGATATTGTTCATTTGTCAACCGGTGATCAAGTTCCAGCTGATGGGATTTATATATCAGGATACTTTTTGCTTATTGATGAATCTAGTTTGTCAGGTGAGAGCGAACCTGTAAATGTAAATGAAGAAAAGCCGTTTCTTCTCTCAGGAACCAAAGTGCAGGATGGTCAGGGGATAATGTTAGTTACAACTGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAAACTCTAAATGAAGGAGGAGAGGATGAGACCCCATTGCAGGTGAAGTTAAATGGAGTTGCTACTATTATTGGTAAAATTGGTTTAACCTTTGCAGTTGTGACATTTTTGGTTTTGACTATAAGGTTTCTTGTCGAAAAAGCAATTCATGGTGAGTTTGCTATTTGGTCTTCAAATGATGCAATGAAGCTGCTGGACTACTTTGCTATTGCTGTAACCATAATAGTTGTTGCTGTTCCTGAAGGATTACCACTAGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGAAAGAGCACTTGTGAGACATCTTTCTGCTTGTGAAACTATGGGTTCAGCTAGTTGCATTTGCACAGATAAGACAGGCACATTGACCACTAACCATATGGTAGTTAATAAAATATGGATATGCGAGAAAACGACCGAGATGAAAGGTAATGATGAGAGTGCAGATGAGCTGAAAACAAAGATACCTGAAGAAGCTCTAAGCATCCTTATGCAGGCTATATATCAAAATACTTCTGCTGAAGTAGTTAAGAACAAAGATGGAAAGAACACAATATTGGGAACCCCAACAGAATCAGCATTATTGGAATTAGGCTTGCTTTTGGGTGGTGATTCTGATGCCCATACCCGTAGTAGAGCATATAAGATACTCAAGGTTGAGCCGTTTAATTCAGTCCGGAAGAAGATGTCAGTGCTTGTGGGTCTTCCTAATGGAGGGGTCCAAGCTTTCTGCAAAGGTGCATCAGAAATAATATTAAAAATGTGTAACAAAATTATTGATTGCAATGGTGAAGTTGTTGATCTTCCTGAAGACCGGGCTAATGATGTTTCTGATGTTATAAATGGCTTTGCCTCTGAAGCTTTGAGAACTCTTTGTTTGGCTGTTAAAGATGTAAATGAAACCCAAGGGGAAGCCAACATTCCTGATAGTGGCTATACTCTAATAGCCATAGTAGGAATCAAGGATCCTGTACGCCCTGGGGTTAAGGAAGCTGTTCAAACTTGTATAGCCGCTGGAATAACTGTCCGCATGGTCACTGGTGATAACATACATACAGCTAGAGCTATAGCTAAAGAATGTGGTATACTTACTGAGGGTGGTGTAGCCATAGAAGGACCAAATTTTCGTGACTTGTCACCAGAGCAAATGAAGGATGTCATACCAAAAATTCAGGTGATGGCACGATCCTTGCCACTCGACAAGCATAAGTTAGTAACTAATTTAAGGAATATGTTTGGTGAGGTTGTCGCTGTTACTGGTGATGGAACTAATGATGCTCCTGCACTGCATGAGTCAGACATTGGACTTGCCATGGGCATAGCTGGAACTGAGGTTGCCAAAGAAAAGGCTGATGTCGTTATAATGGATGATAACTTCGCAACAATTATCAATGTGGTCAAATGGGGACGAGCAGTATATATAAACATTCAAAAATTTGTGCAATTTCAATTAACAGTCAATGTTGTTGCTCTGGTTATCAACTTCGTTTCTGCATGCATCACTGGATCTGCTCCACTCACAGCTGTTCAGCTGCTTTGGGTCAACTTGATTATGGACACTCTGGGTGCATTAGCCCTGGCTACTGAACCTCCTAATGATGGACTTTTGAAAAGACCCCCAGTTGCAAGGGGAGCAAGCTTTATCACCAAAACTATGTGGAGGAATATCATTGGTCAAAGTATATATCAATTAATTGTGCTTGCCATTCTAAATTTTGACGGGAAGAGTCTACTTAGAATTAGTGGTTCAGATGCAACTGAAGTGCTCAACACTTTGATATTCAACGCCTTTGTATTTTGCCAGGTGTTTAATGAGATAAACAGCAGAGATATTGAAAAGATAAACATATTCAGAGGCATGTTTGACAGCTGGATATTTTTGTTGATAATTTCTGCCACCGTGGCATTTCAAGTGGTGATAGTTGAATTCCTGGGAGCGTTTGCCAGCACCGTGCCTCTAAACTGGCAATTCTGGTTACTCAGTATCTTAATTGGTGCAGTTAGCATGCCTATAGCTGCTATCCTCAAGTGCATCCCAGTTGAAAGAAATACCAATAAGCACCATGATGGCTATGAGCCACTTCCATCTGGTCCCGAGCTAGCATAA 3111 0.4131 MESLLKDFEVEHKNPSVEALRRWRSAVSFIVKNRRRRFRMVADLDKRSEAEQIKQGIKEKIRIALYVQKAALQFIDAGNRVEYELSQEAREAGFDIHPDEIASIVRGHNLKNLGNKGGVEAIARKLSVSVDEGVSETSINCRQQIYGVNRYTEKPPRSFLMFVWDALQDLTLIILMVCAVVSIGVGMATEGWPKGMYDGVGIILSIFLVVIVTAVSDYKQSLQFRDLDKEKKKIFVQVTRDGKRQRISIYDIVVGDIVHLSTGDQVPADGIYISGYFLLIDESSLSGESEPVNVNEEKPFLLSGTKVQDGQGIMLVTTVGMRTEWGKLMETLNEGGEDETPLQVKLNGVATIIGKIGLTFAVVTFLVLTIRFLVEKAIHGEFAIWSSNDAMKLLDYFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNERALVRHLSACETMGSASCICTDKTGTLTTNHMVVNKIWICEKTTEMKGNDESADELKTKIPEEALSILMQAIYQNTSAEVVKNKDGKNTILGTPTESALLELGLLLGGDSDAHTRSRAYKILKVEPFNSVRKKMSVLVGLPNGGVQAFCKGASEIILKMCNKIIDCNGEVVDLPEDRANDVSDVINGFASEALRTLCLAVKDVNETQGEANIPDSGYTLIAIVGIKDPVRPGVKEAVQTCIAAGITVRMVTGDNIHTARAIAKECGILTEGGVAIEGPNFRDLSPEQMKDVIPKIQVMARSLPLDKHKLVTNLRNMFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKEKADVVIMDDNFATIINVVKWGRAVYINIQKFVQFQLTVNVVALVINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLKRPPVARGASFITKTMWRNIIGQSIYQLIVLAILNFDGKSLLRISGSDATEVLNTLIFNAFVFCQVFNEINSRDIEKINIFRGMFDSWIFLLIISATVAFQVVIVEFLGAFASTVPLNWQFWLLSILIGAVSMPIAAILKCIPVERNTNKHHDGYEPLPSGPELA. 1037
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03965 1036 NCBIfam HAD-IC family P-type ATPase 547 699 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca2g03965 1036 NCBIfam HAD-IC family P-type ATPase 721 842 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca2g03965 1036 NCBIfam HAD-IC family P-type ATPase 202 513 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca2g03965 1036 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 456 663 IPR023299 GO:0000166
Seca2g03965 1036 Gene3D - 133 333 - -
Seca2g03965 1036 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1015 IPR023298 -
Seca2g03965 1036 NCBIfam calcium-translocating P-type ATPase, PMCA-type 111 1016 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Seca2g03965 1036 FunFam Calcium-transporting ATPase 212 333 - -
Seca2g03965 1036 FunFam Calcium-transporting ATPase 651 799 - -
Seca2g03965 1036 SFLD p-type atpase 432 806 IPR044492 -
Seca2g03965 1036 FunFam Calcium-transporting ATPase 460 658 - -
Seca2g03965 1036 SMART Cation_ATPase_N_a_2 112 187 IPR004014 -
Seca2g03965 1036 Pfam Cation transporter/ATPase, N-terminus 116 182 IPR004014 -
Seca2g03965 1036 Pfam Cation transporting ATPase, C-terminus 839 1012 IPR006068 -
Seca2g03965 1036 Pfam E1-E2 ATPase 235 429 - -
Seca2g03965 1036 FunFam Calcium-transporting ATPase 165 222 - -
Seca2g03965 1036 Pfam Ca2+-ATPase N terminal autoinhibitory domain 5 49 IPR024750 GO:0005516
Seca2g03965 1036 Gene3D - 165 1013 - -
Seca2g03965 1036 Gene3D - 447 799 IPR023214 -
Seca2g03965 1036 PRINTS P-type cation-transporting ATPase superfamily signature 450 464 - -
Seca2g03965 1036 PRINTS P-type cation-transporting ATPase superfamily signature 651 662 - -
Seca2g03965 1036 PRINTS P-type cation-transporting ATPase superfamily signature 673 683 - -
Seca2g03965 1036 PRINTS P-type cation-transporting ATPase superfamily signature 754 773 - -
Seca2g03965 1036 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Seca2g03965 1036 PRINTS P-type cation-transporting ATPase superfamily signature 778 790 - -
Seca2g03965 1036 PANTHER CATION TRANSPORTING ATPASE 87 1015 - -
Seca2g03965 1036 Gene3D - 460 658 IPR023299 GO:0000166
Seca2g03965 1036 SUPERFAMILY Calcium ATPase, transduction domain A 235 331 IPR008250 -
Seca2g03965 1036 FunFam Calcium-transporting ATPase 15 76 - -
Seca2g03965 1036 PRINTS H+-transporting ATPase (proton pump) signature 611 629 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca2g03965 1036 PRINTS H+-transporting ATPase (proton pump) signature 786 811 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca2g03965 1036 PRINTS H+-transporting ATPase (proton pump) signature 754 770 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca2g03965 1036 ProSitePatterns E1-E2 ATPases phosphorylation site. 452 458 IPR018303 -
Seca2g03965 1036 CDD P-type_ATPase_Ca_PMCA-like 142 887 - -
Seca2g03965 1036 SUPERFAMILY HAD-like 449 859 IPR036412 -
Seca2g03965 1036 Pfam Cation transport ATPase (P-type) 505 593 - -
Seca2g03965 1036 FunFam Calcium-transporting ATPase 771 1017 - -
Seca2g03965 1036 Gene3D - 15 77 - -
Seca2g03965 1036 SFLD Haloacid Dehalogenase 432 806 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03965 Seca-Chr2 121230923 121246637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03965 57 1033 Primary Pumps ATPases AT3G57330 74.207 0.0 1498
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03965 K01537 - gmx:100783489 1741.86