Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03955 ATGGATCACAGGACTAAACCCAAGGATCCCCTCTCCTACTCCACTCTCTTCAATCTCGAGTCTTTGATGAACTTTCAACTTCCAGAACAAGATGATGATTTTGATTATTATGGAAATAGTAGTCAGGATGAGAGCAGAGACAGCCAAGTAGGTGGGGCGGCTGCGAATCACAGTAATGGGAACATGCACAGGAGGGATGTAAATTTGTTAAAGAAGAGGAGGCGGTCTCGAAACAGTGACAACGAGGAGAAGAGTGGTTTTTATGGGACACACATGACGGAGGAACGGTATCGATCAATGCTTGGAGAGCATATTCAGAAATATAAAAGGAGGTTTAGGGATTCCTTGATTAGTCCTGCTCAAAATCAGGTTGCTGTTCCACTTGTGAAAAGCAACACAGGATTAAAAGCAAACAAGTCAGGGAATGATCGTAGGGGGGGATTACATGCTGCAGAGACTACACCTGAATGGATGAATGATTCCAATTCTCAGAAATCAGGAAACAATCGTGATGCAGATTTCATGCAGCAATTTGGCACTGATAGGATTATGTATGAACCTGCATACTTGGATATTGGGGATGGTATAGCGTACAAGATTCCTCCAATTTTTGATAAGGTGGCAGCAATGCTGAACCTTCCAAGCTTCTCCGATATCCATGTTGAGGATTTTTACTTAAAGGGTACCTTGGATTTGGGCTCCTTGGCTGAAATGATGGCTGCTGATAAAAGGTCTGGGAATAGAAACCGTGCAGGCATGGGGGAATCTGTATCCCAACATGAATCACTTCAGGCACGACTAAAGCTCATGTCAGCTTCTAATTCAGCTCATAAATTCAGTCTGAAAGTATCTGATGTTGGTTTGAATTCCTCCATCCCAGAGGGGGCAGCTGGAAGCATAAAGCGCTCTATTTTGTCTGAGGGTGGTGTATTGCAAGTTTATTATGTGAAGGTTGTGGAGAAAGGTGACACCTATGAGATCATTGAAAGAAGCCTACCTAAGAAACAAAAGGTGAAGAAAGACCCTGCTTTGATAGAGAAGGAGGAAATGGAAAGATTTGGAAAGATTTGGGTAAATATTGTAAGAAGAGACATACCAAGGTATCATAGGAACTTTACTAATTTTCATCGAAAGCAGCTCACCGATGCCAAGAGGGTCTCTGATAGCTGTCAAAGAGAGGTTAGAATGAAAGTTAGTAGATCACTTAAATGGACAAGGACTGCTAACATGCGCACCCGTAAACTAGCTAGAGACGTGTTACTATTCTGGAAACGAATAGATAAGGAGATGGCAGAAGTGAGGAAAAGAGAGGAAAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAGCTTCGAGAAGCAAAGAGGCAGCAGCAAAGGCTTAGTTTTCTTATACAACAAACTGAGTTGTACAGTCACTTTATGCAGAACAAGTTGAACTTACTATCTTCAGAAGCTTTACCCATGGTAGATGAAAATACAAATGACCAAAAAGAACCGATCAACTCTTCAGATGTTGGGCCTGATGAGGAGGAAGATCCTGAAGAGGCTGAATTGAAGATGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTATAAGCAGAGAAGGTTGACAAGTGCTTTTGACACTGAATGCTTGAGGTTGCGCCAGGCTGGTGAAACTGATTCACTCCCACCAGAAGTTTCTGGAGCAACAAATATTGATTTGCAAACCCCCTCTACCATGCCTGTGGCATCCACAGTTCAGACACCTGAATTATTTAAAGGTCGTCTCAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTAGTTAATTGTTACGAGCAGGGTTTAAATGGTATTCTTGCTGATGAGATGGGACTTGGAAAGACCATTCAGGCTATGGCTTTTTTAGCCCATTTAGCTGAGGAAAAAAACATATGGGGACCTTTTCTAGTTGTTGCACCGGCTTCTGTATTAAATAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGAACTGAAAAGACTTCCTTATTGGGGCGGGCTTTCAGAGCGGACAGTGCTTAGGAAAAGTATCAACCCAAAGGATCTTTATCGTCGGGAAGCTAAATTTCATATTCTCATCACAAGCTACCAGCTATTAGTATCTGATGAGAAGTATTTTCGGCGTGTGAAATGGCAGTATATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTTCAAACAGTATAAGATGGAAGACACTCCTCAGCTTTAATTGTCGGAATCGCCTTCTGTTGACTGGTACACCAATTCAGAATAATATGGCTGAGTTATGGGCTCTTCTGCACTTCATCATGCCAACTTTATTTGACAGCCACGAGCAGTTTAATGAGTGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGAGGTACTTTGAATGAGCACCAACTTAATCGGTTGCATTCAATTCTAAAGCCTTTTATGCTGCGACGCGTTAAAAAAGATGTAATTTCTGAGCTGACTACAAAAACTGAGGTTACCGTGCATTGTAAATTGAGTACTAGGCAGCAGGCTTTCTATCAAGCAATTAAGAACAAGATATCTCTTGCTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAATGAGAAGAGAATCATGAATTTAATGAACATTGTTATTCAACTAAGGAAGGTTTGCAACCATCCAGAGCTGTTTGAAAGGAGTGAGGGAAGCACATACCTGTACTTTGGAGAGATTCCAAATTCCCTTCCACCTCCTCCATTTGGGGAGTTAGAGGACGTATATTATTCTGGTGGTCTCAACCCCATATCATATGAGATACCAAAACTTGTCTATCAAGAAATAATGCAAAGTTCTGAAACTCTTGGTTCAGCTGTTGGTCATGGTGTCTGCAGAGAATCTTTTCAGAAACATTTTAATATTTTTAGACCAGAAAATGTTTATAGATCTGTCTTTTCAGAAGATATATATGTTAAAAGTGGAAACTTCGGTTTTACGCATTTGATGGATTTGTCTCCACAAGAGGTGACGTTTCTGGCCGCTAGCTCTTTAATGGAGCGACTACTATTTTCTATGATGAGATCAGAACAAAAATTCATTAATGAAGTTGTAGACTTTCTTACGGAGACCATAGATGATGATCCAGAATGTAGTTACCTTGAGAAAGGAAAAGTGAGAACTGTCACACGAATGGTATTGGTACCATCAAGATCTGAGACTAAGTTTTTTCAAAGAAGATTGCCAACTGGGCCCAGCCATACTCCTTTTGAGGCCTTGGTTGTCCCACATCAGGATAGGCTTTTATCAAATGCAAGGCTTCTTCACTCAGCCTACACATATATCCCACAAAGCAGAGCTCCCCCAATTGGTGCTCACTGCTCTGATAGAAACTTCTACTCTAAAATGATTGAAGAATTACATGACCCCTGGGTTAAGAGGTTGTTTGTGGGATTTGCACGTACATCTGATTGTAATGGGCCTAGAAAGCCAGATGGTCCTCATCATTTAATTCAAGAGATAGATTCTGAACTGCCTGTTTCTCAGCCTGCTCTTCAGTTAACGCACAGAATTTTTGGGTCTTCTCCACCTATGCGAAATTTTGACCCAGCAAAATTGCTCACTGACTCTGGGAAACTTCAAACACTTGATATATTATTGAAACGCTTACGAGCAGAAAATCATCGTGTTCTTTTGTTTGCTCAGATGACCAAGATGTTGAATATTTTGGAGGACTATATGAACTATAGAAAATATAAGTATTTTAGACTTGATGGGTCATCTACTATTCAGGACCGCAGAGACATGGTCAGAGACTTTCAGCATAGGGCTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTCATATTTTATGAGAGTGATTGGAATCCAACATTGGACCTACAGGCAATGGACAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCATAGAGCTAGTCAGAAAAGTACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATCTTCTAGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGTTCAGTTGGAGCAGAAATTAAAGGAAATCCCTCTCCAGGTAAAGGATAAGCAAAAGAAAAAACAACCTACGAAGGGTATTCGGTTAAATGAAGAAGGTGATGCTTCTCTGGAAGATCTATCAAATTCTTTAGCCCAGGATACTACAGAATATGATCTTTTCATGGACCCGGAGGGATCAAAGTCCAGTAATAAAAAGAGAAAAGCTGCCTCAGATAAGCAAATTTCAAGGCCAAAGAATTCGCAGAAGATGAATTGGATGATGTCCACTTAA 4398 0.4111 MDHRTKPKDPLSYSTLFNLESLMNFQLPEQDDDFDYYGNSSQDESRDSQVGGAAANHSNGNMHRRDVNLLKKRRRSRNSDNEEKSGFYGTHMTEERYRSMLGEHIQKYKRRFRDSLISPAQNQVAVPLVKSNTGLKANKSGNDRRGGLHAAETTPEWMNDSNSQKSGNNRDADFMQQFGTDRIMYEPAYLDIGDGIAYKIPPIFDKVAAMLNLPSFSDIHVEDFYLKGTLDLGSLAEMMAADKRSGNRNRAGMGESVSQHESLQARLKLMSASNSAHKFSLKVSDVGLNSSIPEGAAGSIKRSILSEGGVLQVYYVKVVEKGDTYEIIERSLPKKQKVKKDPALIEKEEMERFGKIWVNIVRRDIPRYHRNFTNFHRKQLTDAKRVSDSCQREVRMKVSRSLKWTRTANMRTRKLARDVLLFWKRIDKEMAEVRKREEKEAAEALRREQELREAKRQQQRLSFLIQQTELYSHFMQNKLNLLSSEALPMVDENTNDQKEPINSSDVGPDEEEDPEEAELKMEALKAAQEAVYKQRRLTSAFDTECLRLRQAGETDSLPPEVSGATNIDLQTPSTMPVASTVQTPELFKGRLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTTKTEVTVHCKLSTRQQAFYQAIKNKISLAELFDSNRGQLNEKRIMNLMNIVIQLRKVCNHPELFERSEGSTYLYFGEIPNSLPPPPFGELEDVYYSGGLNPISYEIPKLVYQEIMQSSETLGSAVGHGVCRESFQKHFNIFRPENVYRSVFSEDIYVKSGNFGFTHLMDLSPQEVTFLAASSLMERLLFSMMRSEQKFINEVVDFLTETIDDDPECSYLEKGKVRTVTRMVLVPSRSETKFFQRRLPTGPSHTPFEALVVPHQDRLLSNARLLHSAYTYIPQSRAPPIGAHCSDRNFYSKMIEELHDPWVKRLFVGFARTSDCNGPRKPDGPHHLIQEIDSELPVSQPALQLTHRIFGSSPPMRNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVRDFQHRADIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKEIPLQVKDKQKKKQPTKGIRLNEEGDASLEDLSNSLAQDTTEYDLFMDPEGSKSSNKKRKAASDKQISRPKNSQKMNWMMST. 1466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03955 1465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 821 1387 IPR027417 -
Seca2g03955 1465 Gene3D - 1176 1431 IPR027417 -
Seca2g03955 1465 MobiDBLite consensus disorder prediction 30 89 - -
Seca2g03955 1465 MobiDBLite consensus disorder prediction 1389 1465 - -
Seca2g03955 1465 FunFam Putative DNA helicase INO80 563 841 - -
Seca2g03955 1465 MobiDBLite consensus disorder prediction 493 518 - -
Seca2g03955 1465 CDD SF2_C_SNF 1197 1329 - -
Seca2g03955 1465 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 603 774 IPR014001 -
Seca2g03955 1465 Gene3D - 564 844 IPR038718 -
Seca2g03955 1465 SMART helicmild6 1235 1318 IPR001650 -
Seca2g03955 1465 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 819 IPR027417 -
Seca2g03955 1465 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1209 1393 IPR001650 -
Seca2g03955 1465 MobiDBLite consensus disorder prediction 134 172 - -
Seca2g03955 1465 MobiDBLite consensus disorder prediction 1434 1449 - -
Seca2g03955 1465 MobiDBLite consensus disorder prediction 1450 1465 - -
Seca2g03955 1465 MobiDBLite consensus disorder prediction 73 89 - -
Seca2g03955 1465 SMART ultradead3 587 782 IPR014001 -
Seca2g03955 1465 MobiDBLite consensus disorder prediction 155 172 - -
Seca2g03955 1465 Pfam DNA-binding domain 351 480 IPR020838 GO:0003677
Seca2g03955 1465 PANTHER HELICASE SRCAP-RELATED 77 526 - -
Seca2g03955 1465 MobiDBLite consensus disorder prediction 41 56 - -
Seca2g03955 1465 FunFam DNA helicase INO80-like protein 1177 1428 - -
Seca2g03955 1465 Pfam SNF2-related domain 606 893 IPR000330 GO:0005524|GO:0140658
Seca2g03955 1465 Coils Coil 428 467 - -
Seca2g03955 1465 Pfam Helicase conserved C-terminal domain 1209 1318 IPR001650 -
Seca2g03955 1465 ProSiteProfiles DBINO domain profile. 356 481 IPR020838 GO:0003677
Seca2g03955 1465 MobiDBLite consensus disorder prediction 1389 1410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03955 Seca-Chr2 121132586 121145258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03955 612 901 RAD5 or RAD16-like Gene Family AT5G43530 28.571 4.73e-26 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca2g03955 SNF2_N 4.3e-66 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03955 K11665 - gmx:100780615 2536.14