Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03933 ATGAGTTTTGTCTCGCTTAACAGAGAATTTTCTATACGCACCGCCAATGATCAAGCCGTTGTTAAAATACTTAAGAGACTCAGCTATTTACCCACTATGACGTGCTTTTTTGGGACTAATCATTTCTATGGTTATGCTACCATTACAAATGGAGATGTTGATGGAAATAAATTGGAATGTTCAGTTTCACAATTTGAGAGGCGTAACATGGTCACAACTCTTGCCACCATTGCATTGGCAATATTCAAGCAATTTATAGCAAAAGAGAAACCAAATCGAAATTCCTTTGTCATCATTATCGGTGTACATCGAATGATAGAGAAGTCTATTGCAACAGAAAAAGTACCTAAACTGGGTATGGAGTTTGATACTATACATCAAGCTCGAGTTTTTTGGACAAATTATGGTGGAATGTTTGGTTTTGATATAAGACAATTGTATGCGAATAAGAATAAAGTGGACCAGCGTGTGAATAGCTTGCGACTTGTGTGTGCAAAGGAGGGTCATCGAAGACAAGATAAGCGAGATTATTTAACACAAATTCCTCGTGCAGAAACAAGAACAGGTTGTCAAGTAAGAATGGTACTCAAGTTAGTACGTGAAACTGGAAAGTATGTGATATATGATCTTGAGTTGAATCACAATCATATTTTGCAAACTTCAGAAACTACACATATGATGCCTTCACAGAGAAAGATTTCAGAAGTGCAAGCTTTGCAAATTGACTTGGCCGATGACTCTGGTATAAGACCAAAGGAAACACATGAGCTAATTAGTAAGCAAGCAGATAGTGAGGAAAAAATTACAAATATTTTTTGGGCTGATGCAAGAATGGTTATTGATTATGCTAAATTTGGTGATGTGATTACATTTGACACCACATACTGCACAAATAAAGAAAGTAGGCCATTAGGTGTTTTTTGTGGATTTAATCATCATCGAGAAACTGTTATATTCGGAGCTACTCTTTTGTATGATGAGACGGCAGAGTCTTTCATATGGTTGTTTGAATCATTTTTAGCAGCTCATAAGCAAAAGAAGCCTAGAACTATTTTCACTTATCAGGACCCTGCAATGGCAAAAGCTTTAGCCGTGGTGATGCCGGACAGTTACCATGGATTATGTGTTTGGCATATTATGCAAAATGGTATACGAAACTTAGGAAATATGATGAAGAATGGATCTAGTATTTTGAAAGATTTCAAAGCTTGCATGTATAATTATGAAGATGAATCAAAATTTCATAAGGCATGGGATGCTTTGCTTTATAATTATAAAGTTGAAAGTAACACTTGGTTGCAAAGTATTTTTAAGGTGAAGGAAAAATGGGCTCATTGCTATATGAAGAGGGTTTATACTATTGGAATGCGAAGTACTCAACTAAGTGAAAGCTTTAATAGTGATTTAAAAGATCATATGAGATCAAGTTTAGATCTAGCACAATTTTTCAAGCATTTTGAGCGAGTTGTAGATTCCAAGCGGTATAAAGAGTTAGAAGCTGAATATAATGCTAGAAAAAAGCTACCTCGACTTAATATGGAACACTCACCATTGCTAAAACATGTTGGGCATCTTTATACTCCCACTGCATTTGATTTATTTCAAAATGAATTTGATTGGAGTTCTACTGCCTATATTGTTTCTTGTAATGAGGTTGATCAAATGATTACATATGTGGTTTCTATTTTTGATAAAGCTGGAGAATATGAAGTTATTGGTGATATGAAAGAGAAAACAATTTCATGTAGTTGTGGAATGTTTGAAACAATGGGTCTTTTGTGTTGTCATGCTTTGAAAGTGTTTAATGTGTGGGATGTGAAACAAATTCCAGATCAATACATTGTGAAGAGATGGACAAGAGAAGCAAGAGATATGGTTGTTCATGATGTGAATGGCAAAGTTGTTGAAGCTAATGTTAATATGAATGCTGGTGAACAATATAGAAACCTTTGTTTGAAATTGGTCAAATTAGCTGCTCGAGCATATGATTATGAAGAAACATATAATCTTGTTGTTCAAGGTATAGATGAAATGAATAAGAGGGTTGATTCTTTTTCTAGATGTCAGCTACCGGTGGAAAAAGATGTTCCGGCATTGGAGAGTGGTTTTGAAAATATTAAAGGCTTGAAAAAGAAAGAAGGACAAAAAGGTAGAAGAAAGAGACTGAAAAGTTGGGTTGAAAAACAGTCCAATAACGGGAAGGCTTCAAACAAAAAGGAATTATCAAACCAACAATCTCAGGACAACCTTTCTCAAATCCCAGTTTCAATATCATTGTCAAGTCAGGCTTTTTCATCAAAGGATTCATGCTTTAATATTTCCCATCCATCATCAACTCATGTGACAGCAAAGATCCAAACAGAAAGTCAAGCTCAGTCAATTTACCATTCTGGCCAAGCTTTGAAGGAATAG 2412 0.352 MSFVSLNREFSIRTANDQAVVKILKRLSYLPTMTCFFGTNHFYGYATITNGDVDGNKLECSVSQFERRNMVTTLATIALAIFKQFIAKEKPNRNSFVIIIGVHRMIEKSIATEKVPKLGMEFDTIHQARVFWTNYGGMFGFDIRQLYANKNKVDQRVNSLRLVCAKEGHRRQDKRDYLTQIPRAETRTGCQVRMVLKLVRETGKYVIYDLELNHNHILQTSETTHMMPSQRKISEVQALQIDLADDSGIRPKETHELISKQADSEEKITNIFWADARMVIDYAKFGDVITFDTTYCTNKESRPLGVFCGFNHHRETVIFGATLLYDETAESFIWLFESFLAAHKQKKPRTIFTYQDPAMAKALAVVMPDSYHGLCVWHIMQNGIRNLGNMMKNGSSILKDFKACMYNYEDESKFHKAWDALLYNYKVESNTWLQSIFKVKEKWAHCYMKRVYTIGMRSTQLSESFNSDLKDHMRSSLDLAQFFKHFERVVDSKRYKELEAEYNARKKLPRLNMEHSPLLKHVGHLYTPTAFDLFQNEFDWSSTAYIVSCNEVDQMITYVVSIFDKAGEYEVIGDMKEKTISCSCGMFETMGLLCCHALKVFNVWDVKQIPDQYIVKRWTREARDMVVHDVNGKVVEANVNMNAGEQYRNLCLKLVKLAARAYDYEETYNLVVQGIDEMNKRVDSFSRCQLPVEKDVPALESGFENIKGLKKKEGQKGRRKRLKSWVEKQSNNGKASNKKELSNQQSQDNLSQIPVSISLSSQAFSSKDSCFNISHPSSTHVTAKIQTESQAQSIYHSGQALKE. 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03933 803 Pfam SWIM zinc finger 566 602 IPR007527 GO:0008270
Seca2g03933 803 MobiDBLite consensus disorder prediction 710 748 - -
Seca2g03933 803 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 107 683 IPR031052 GO:0006355
Seca2g03933 803 Pfam FAR1 DNA-binding domain 131 219 IPR004330 -
Seca2g03933 803 SMART 26again6 580 607 IPR006564 GO:0008270
Seca2g03933 803 Pfam MULE transposase domain 288 382 IPR018289 -
Seca2g03933 803 MobiDBLite consensus disorder prediction 728 748 - -
Seca2g03933 803 MobiDBLite consensus disorder prediction 782 797 - -
Seca2g03933 803 ProSiteProfiles Zinc finger SWIM-type profile. 569 605 IPR007527 GO:0008270
Seca2g03933 803 MobiDBLite consensus disorder prediction 782 803 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03933 Seca-Chr2 120600895 120604811 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca2g03933 MULE 1.7e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03933 - - ahf:112705019 813.913