Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03927 ATGATTGAAAGGCGTGAAACCGAATTCATTGAAGAAATTGTTGCAGAGGTATGGAAAAAGTTACAACCTAAGTTGCCACCCTATGATGATGAACTGGTTGGAATTGATTCAAGGATAAACAGCATTAATTCACTTCTAAGGACAGAGTCAGAGGAAGTTCGCTTTGTAGGGATATGGGGCATGGGTGGCATAGGAAAGACAACTCTAGCCAAATTTGTCTACAAGAAAATCCATAGCCAATTTGATATTAGTTGCTTTCTCGAGAATGTGAGAGAGGTTTCTAGTGAAAGAGATGGTTTGCTTAGTTTACAAAGAAAATTGCTTTCTCATCTAAAAATAAGCAGCATGAGAATTGAAACTTTGGACCAAGGGAGGGAGACAATACAGAATCTTTTGTTCAATAAAAAAGTTCTCCTTGTCCTTGATGATTTAAGTTCTGATATCCAACTAGAGAATTTAGCTGGAAGGCTAGAATGGTTTGGTCCAAGGAGCAGAGTAATAATAACAACTAGAGACAAGCACCTCCTAGAATCACTTGGTGTGTGTGAACATTATGATGTTCAAAGTTTAAATAGTGATGAATCTTTTCAGCTTTTTTGTCAAAAAGCTTTTAGAAGAGGAAAACCTGAAGAAGCTTACATAGAGTTGTCAAAATGTATGGTTCAATATGCTGGAGGTGTTCCTTTGGCACTCAGAGTTTTGGGCTCATTTCTTTGTGGAAGAACTGCATCTGTATGGGAAGATGCTTTGAAAATGTTAAGGCAAGATCTACAAAATGATATTTACAAGACACTAAGAATAAGTTATGATGGATTGCTAGATACAGAGAAGGCTATATTTCTAGATATTGCTTGTTTTTTCAAAGGGAGCACCAAAGAATATGTGACACAAATATTGCAAAATTGTGGTCTTAATCCATTGATTGGTATAGATGTTCTTATTGAAAAATCATTAATAACTTATGATGGGTGGCATTTGGGGATGCATGATTTACTTCAAGAAATGGGTAGAAATATTGTTCTGCATGAATCTCCTAATGATGCTGGCAAGCGAAGTAGGTTATGGTCTTTCAAGGAGGTTGATCAAGTATTGAGAAATAATAGGGGAACTGAATCCATTCAAGCTGTAGTTCTAAATCTGCCTGAACCATGTGATGCACATTGGAATCCTGAAGCCTTCTCAAAGATGAGTAATCTTAGACTGCTCATGATATTAAATAAATTGCACCTTCCACTCAGCCTCAAGTGTCTTCCCAGTGGGTTAAAAGTTCTTGTATGGAGGGAATATCCTCTTGAATCATTGCCAGTTGGAGATCAATTGGATGAACTTGTTGACCTTGATATGTGTCACAGCAAAATAAAACACCTTTGGAGAGGAACAAAGTTTCTGGGAAATTTGAAGACCATCAATTTGAGAAATTCCAAAGATCTCCATATAACTCCAGATTTCACTGGAATACCAAATCTTGAAATATTGGATCTTGAAGGCTGCATCAACCTAGTTGAGGTTCATGCATCTCTTGGACTTCTTAAAAAGCTTTGGTATGTGTCATTGGAAGATTGCAAAAATCTCAAAATCCTTCCAAAAAAATTGGAAATGGATTCTTTAAAGCGTCTGATTCTCTCAGGCTGCACAGCAGTTAGAAAGCTTCCCGAGTTTGGGGAAAGTATGACAAATCTGTTCATGCTTGCCTTAGACCAGACTTCCATATCTGAACTACCTTCATCTGTTGGTTACTTGACAGGTCTTAATATCTTGCTTTTAAGGGATTGTAAAAATATTGTTTGCCTTCCAAATACCTTCTCTAATTTGAAATCTCTCAGAAGGCTCAATGTCTCTGGTTGCTCAAGATTTTCTAAGCTGCCTGATAATTTGAATGAAAATGAGGCTTTGGAGTGTCTTAATGTGAGTGAGACTGCTATAAGGGAAGTTCCTTCATCCATTGTTCACTTAAAAAACCTTACACTACTTCTATTTCATGGATGCAAAGGACTAACATCAAACTCACACAGCTCAGTTCTCCCTTTGGGGAAGATTTTTGGGTTTAGCAGTCATCCAATTCCAAAGAAACTAATCCTGCCTTCTTTTTCTGGTTTATCCTCATTGAAGAAACTGGACTTAAGCTACTGCAATCTCCATGATGGATCAATTCCTGATGATCTTGGCTGCTTATCATCATTGGTAACATTAGATCTAAGTGGGAACAACTTTGAGCACCTTCCTGCTGGCTGCATCTCTAAACTTTTGAAGCTAGAAAGCCTTTTATTGAAGTGTTGCCCAAGGCTGCAGTCATTGCCTAAGCTGCCACGAAATGTACATTATGTAAATGCAAGTGATTGTAGTTCAATGAAACCCTTATCAGATCCACAACAGATATGGGGTCACTTGGCATCCTTTGCCTTTGATAAGTTGCAAGATGATAACAAGCTTAGAACTTTATTGGTAACTCCAGGAAACGAAATTCCATCATCTTTTTTCTACCAAAACTATTTCGACCGGGACATACAATATTTAAAAGACAACTACATTTGGGCTGATTCTACTGTGTCAATTTCATTGGACTTAGCTCAAATTCGTCAGCGGTATGATAAAAGTGAATGGTGGGGAATTTTGGTCTGCCTTGTCATAGAAGATGTTATGTCTTCACCTTCACAGGACTATCGTGTTGGTTGGATTTCAAAAGTTCCTACAATCAATAATTTTTTGCGCCAGCTATGTCACAGGTTGTTGGAGCATGGATTCATTTCTGGGATACCAAATCATAAGTATCCTCATCTATTGGTTTTATATATTCCAGTTCCTTCATCTCGTTGGTCTTATGTCCAAGACAAGTTTCAATTAATATTCTTCAGTTCTAGTCTCAAGAGTAAGTTAGTGATTAAGAAATGTGGATGGCGCATATTATGTAAGGAAGATGCTGAAGCCTGGAGCAGAAAACTGTCTGAATGCAACACTTCTTCTGCCAACCAATGTGTTCCAAGAGGCAATAGCTTACCTTCTTCTTTGGCATCATGGAAATGGATAAGTAATCTCAAGGTTCCTCAACGTCGCAAGACTTTCCTCTTAGCAGTCCTCTGTGATCGTTTACCTACTAATGCAAAGTGCAGATTTTGCAGCTTGGAAGAAGGGACTAGGACTGTCATCCATGTTTTAAGGGATTGTAGGAGAGCTCGTGCAATCTGGGGTCAAATGATTCCTCCTGAAGTGCATGATGAGTTTTTTTCAATGTCTCTTCATGATTGGATGCATAGGTTCCTTCGAAAGCCTTGGTTGGTTAATAACTCTAAGGACTATGATGCTGACTGTTTGAGGTTCACTGTCACTACTTGGCTGCTATGGGAGGATGGAAATAATTCAATTCCTGATGGAGGGTCTCTAACAGATGATGGGTTGTATTCTCTGATTCAGTCTCTAGTACAAGAATATTCAAAGGTTTTGAATTTGAATGAGGGAGAGGGTAGTAGTAGTAGTAGTTCTGTTGTGAGTTCTCTCCCCCAGAACTCACCTCCCAAGGTTTTTATTAAGTTGAATGTGGATGGCTATTGCATGGATAACCCTGGAAATGGTGGTTATGGTGGTCTTTTTCGTGATGTGGAAGGGAAGTGGCTTGGTGGATTCTATGGATTTCTGGGCTTTACAACAAATATAAAAGCTGAGCTTTATGCCATTTGTCAGGGTTTGATAGCAGCTTGGGATTTGGGTTACAGAAATGTGTTAGTTGAAACTGATTCCTTGGAAGTTGTACATCTCATTGAGGAGGCCAATATTGAGGAGCATCATGGCTATGGTAGCTTGTTGGTTGACATACGCTCCCTCATGCAAAGAAATTGGTCCTTAAATTTGGTTCATTCTGTTAGGGAAGATAATGGTTGTGCAGATATTTTAGCGAAGCTTGGAGCTGAGCAGCATGAGGTCTATTGCTTCCTGGCTTATCCACCTCAGCAGCTTCAACAGGCATTGATGGCTGATGCCCTGAATGTTAAGCTGCCTTGCATGTAG 3999 0.3893 MIERRETEFIEEIVAEVWKKLQPKLPPYDDELVGIDSRINSINSLLRTESEEVRFVGIWGMGGIGKTTLAKFVYKKIHSQFDISCFLENVREVSSERDGLLSLQRKLLSHLKISSMRIETLDQGRETIQNLLFNKKVLLVLDDLSSDIQLENLAGRLEWFGPRSRVIITTRDKHLLESLGVCEHYDVQSLNSDESFQLFCQKAFRRGKPEEAYIELSKCMVQYAGGVPLALRVLGSFLCGRTASVWEDALKMLRQDLQNDIYKTLRISYDGLLDTEKAIFLDIACFFKGSTKEYVTQILQNCGLNPLIGIDVLIEKSLITYDGWHLGMHDLLQEMGRNIVLHESPNDAGKRSRLWSFKEVDQVLRNNRGTESIQAVVLNLPEPCDAHWNPEAFSKMSNLRLLMILNKLHLPLSLKCLPSGLKVLVWREYPLESLPVGDQLDELVDLDMCHSKIKHLWRGTKFLGNLKTINLRNSKDLHITPDFTGIPNLEILDLEGCINLVEVHASLGLLKKLWYVSLEDCKNLKILPKKLEMDSLKRLILSGCTAVRKLPEFGESMTNLFMLALDQTSISELPSSVGYLTGLNILLLRDCKNIVCLPNTFSNLKSLRRLNVSGCSRFSKLPDNLNENEALECLNVSETAIREVPSSIVHLKNLTLLLFHGCKGLTSNSHSSVLPLGKIFGFSSHPIPKKLILPSFSGLSSLKKLDLSYCNLHDGSIPDDLGCLSSLVTLDLSGNNFEHLPAGCISKLLKLESLLLKCCPRLQSLPKLPRNVHYVNASDCSSMKPLSDPQQIWGHLASFAFDKLQDDNKLRTLLVTPGNEIPSSFFYQNYFDRDIQYLKDNYIWADSTVSISLDLAQIRQRYDKSEWWGILVCLVIEDVMSSPSQDYRVGWISKVPTINNFLRQLCHRLLEHGFISGIPNHKYPHLLVLYIPVPSSRWSYVQDKFQLIFFSSSLKSKLVIKKCGWRILCKEDAEAWSRKLSECNTSSANQCVPRGNSLPSSLASWKWISNLKVPQRRKTFLLAVLCDRLPTNAKCRFCSLEEGTRTVIHVLRDCRRARAIWGQMIPPEVHDEFFSMSLHDWMHRFLRKPWLVNNSKDYDADCLRFTVTTWLLWEDGNNSIPDGGSLTDDGLYSLIQSLVQEYSKVLNLNEGEGSSSSSSVVSSLPQNSPPKVFIKLNVDGYCMDNPGNGGYGGLFRDVEGKWLGGFYGFLGFTTNIKAELYAICQGLIAAWDLGYRNVLVETDSLEVVHLIEEANIEEHHGYGSLLVDIRSLMQRNWSLNLVHSVREDNGCADILAKLGAEQHEVYCFLAYPPQQLQQALMADALNVKLPCM. 1333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03927 1332 CDD RNase_H_like 1176 1297 IPR044730 -
Seca2g03927 1332 SUPERFAMILY L domain-like 376 786 - -
Seca2g03927 1332 Gene3D - 189 273 IPR042197 -
Seca2g03927 1332 Gene3D Ribonuclease Inhibitor 364 679 IPR032675 -
Seca2g03927 1332 Gene3D - 18 184 IPR027417 -
Seca2g03927 1332 SMART LRR_typ_2 604 628 IPR003591 -
Seca2g03927 1332 SMART LRR_typ_2 724 747 IPR003591 -
Seca2g03927 1332 SMART LRR_typ_2 557 580 IPR003591 -
Seca2g03927 1332 SMART LRR_typ_2 699 723 IPR003591 -
Seca2g03927 1332 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 553 IPR044974 GO:0006952
Seca2g03927 1332 Pfam Reverse transcriptase-like 1177 1297 IPR002156 GO:0003676|GO:0004523
Seca2g03927 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 21 283 IPR027417 -
Seca2g03927 1332 Pfam NB-ARC domain 42 269 IPR002182 GO:0043531
Seca2g03927 1332 FunFam Disease resistance protein (TIR-NBS-LRR class) 191 273 - -
Seca2g03927 1332 SUPERFAMILY Ribonuclease H-like 1174 1303 IPR012337 -
Seca2g03927 1332 Gene3D Ribonuclease Inhibitor 682 839 IPR032675 -
Seca2g03927 1332 ProSiteProfiles RNase H type-1 domain profile. 1170 1301 IPR002156 GO:0003676|GO:0004523
Seca2g03927 1332 Gene3D - 1173 1302 IPR036397 GO:0003676
Seca2g03927 1332 PRINTS Disease resistance protein signature 697 713 - -
Seca2g03927 1332 PRINTS Disease resistance protein signature 131 145 - -
Seca2g03927 1332 PRINTS Disease resistance protein signature 224 238 - -
Seca2g03927 1332 PRINTS Disease resistance protein signature 55 70 - -
Seca2g03927 1332 SUPERFAMILY "Winged helix" DNA-binding domain 260 364 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03927 Seca-Chr2 120527182 120532786 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03927 1 659 WRKY Transcription Factor Family AT4G12020 33.776 2.62e-89 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03927 - - tpra:123888765 1972.98