Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03899 ATGCTTGCATTCTCCACTACTCCTCTGTTCTCCATGGGATGTCCCTTATTAGAGGAAAAGCCCTTAAGTCATAACCAAAACTACTTGTATAAAGATCATACTGATCCATCCTCATCAGAGTACTCATCATTTACACATCAATTCTCTTCTTCACCACAATCACAGGTAGTTGAGATTGAAAAAGGGTCTAGTGCTACACCATCCTCAGATCCTACCATGGTGATCAAGAAGCTTAACCACAATGCTAGTGAACGTGATCGCCGCAGGAAGATCAATGGCTTGATTTCTTCACTTCGTTCACTTCTTCCATTGTCACATCAAACGAAAAAGATGAGCATTCCAGTCACAATTTCGCGAGTCTTAAAATACATACCTGAGTTACAACAACAGGTGGAAGGACTAACTAAGAAAAAAGAGGAGCTTCTATCCAGAATTTCTCGGCAAGGAGATGCCCTCAACAAAGAATCTCAAAGGAAGATTATTCCCTATCAAAACTCTGATTTTGTAGTTTCAACAAATAGACTCAATGATAATGAGGCTACCATTGAGATTTCTTCTTTTGAAGTCCACAAGACCCCTCTATCTGAGATATTGCTCTGTTTAGAAAATAATGGGCTTCTTCTGCTTAATGCTTCTTCCTCTGAAACCTTTGGAAGGAATAGGGTCTTCTATAACTTGCATTTCCAGGTGGAAAAAACTCATAGATTAGAGTCTGATATTCTGACTCAGAAGCTTTTGTCAATATGTGAGAAGAAGCAAAGACTTTTGTAA 771 0.3891 MLAFSTTPLFSMGCPLLEEKPLSHNQNYLYKDHTDPSSSEYSSFTHQFSSSPQSQVVEIEKGSSATPSSDPTMVIKKLNHNASERDRRRKINGLISSLRSLLPLSHQTKKMSIPVTISRVLKYIPELQQQVEGLTKKKEELLSRISRQGDALNKESQRKIIPYQNSDFVVSTNRLNDNEATIEISSFEVHKTPLSEILLCLENNGLLLLNASSSETFGRNRVFYNLHFQVEKTHRLESDILTQKLLSICEKKQRLL. 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03899 256 FunFam Transcription factor ORG2 71 156 - -
Seca2g03899 256 SMART finulus 81 133 IPR011598 GO:0046983
Seca2g03899 256 Gene3D - 70 159 IPR036638 GO:0046983
Seca2g03899 256 MobiDBLite consensus disorder prediction 51 71 - -
Seca2g03899 256 Coils Coil 124 144 - -
Seca2g03899 256 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 63 247 - -
Seca2g03899 256 Pfam Helix-loop-helix DNA-binding domain 76 128 IPR011598 GO:0046983
Seca2g03899 256 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 76 145 IPR036638 GO:0046983
Seca2g03899 256 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 127 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03899 Seca-Chr2 120017539 120019217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03899 73 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 48.087 3.48e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca2g03899 HLH 8.9e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03899 - - gmx:100803424 277.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03899 2 120017539 120019217 Seca2g03899 2 120017539 120019217 ECH