Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03893 ATGGTGTATTGTGATCACTGTTGGAAAAACGTTTCCGGTTTGCGAGTCGATGATGGTCCCTTATGTTGTAGCGAATGTGGGAAGGTGTTGGAAGACTTTCATTTTTCTCAGGAGCCCACCTTTGTGAAAAATGCGGCCGGGCAGAGCAAATTATCAGGCCATTATGTAAGAACGATTCAAAGTGAGTACTCTGCTTCACGTCAAAGGACTTTAGATAGAGCTTATGATGATATCAAATATTTAAGTTTCAACCTTGGAGTGAATGATGATAATATGGCCAACCAAGCTTTGGCCTTTTATAGAATAGCACTAGAGCGAAATTTCACCAGGGGACGTAAATCAGAACAAGTGCAGGCTGCTTGTCTCTATATTGCATTCCGGGAAAATAATAAACCTTACCTTCTTATTGATTTTTCAAATTATTTAAGGACAAATGTCTATGTGCTAGGTGCAGTTTTTTTGCAGCTTTGTAAAGTATTAAGGCTCGAAGAGCACCCAATTGTTCAAAAACCTGTTGATCCCAGTCTTTTTATTTATAAATATACAAATAATTTGTTAAAGCAAAGGAACGTGCTTGTCTCCGAAACTGCACTGAGCGTTATTGCCAGCATGAAGCGTGACTGGATGCAGACAGGGAGGAAGCCTAGCGGATTATGTGGCGCAGCATTATACATGTCTGCTCTCGCACATGGTTTTAAGTGCTCTAAGTCAGATATTCTAAGGATTGTCCATGTATGTGAAGCAACGTTGACTAAGCGTTTGGTAGAGTTTGAGAATACAGAGTCTGCTAGCTTGACAATTGATGAATTGAATACGATGGCAAAAGAGCATGAAAAAAACCCAATTAAAATACCAGATGGTGAACTGAACAAATGTGCTTCAAAGGATCTACTATGTGAACACAAGGATAGTGGCGTGCCCTACTTTGCACTTGGATTATGTGAAACATGTTACAAGGATTTTGATAAACTCTCTGGCGGACTTGGTGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGAGAGAATGACAAAATCACATTCCGAGGAAAGTGCCAATAAGTCAGATGATTTGGCGAAAGCATCAACTGGCGCATGTGAGAGCCAAATAGATGAATTACATGCCTCTGAGCCTGAAAGTATTGGTGAGGCTTTTATTTCTCTCTCTCTCTCTCTACATTTCTCTGCTTACAATGGTGAGCATGACGAGTCGCATAAAGAAGATGAATCAGAAAGTTTCTCTGATATCGATGATCATGAGGTTGATGGCTACCTTCTTCACAATGAGGTGGAAAAGCATTACAGGAAGACTATGTGGGAACATATAAATCGAGAGTATCTTGAGGAACAAGCGGCCAAGGAAGCAGCTGCTGCTGCTTCTAAGAAAAACTTTGAGGCAAATTTCCAAAACTGCTCTGAGGATTATCTTGCAGCAAGAGAACTTGCTGCATCTGCTACTGCAGCTGTGGCAAAATCCAGAAAGGAAATGAAGCAGAGACGAGCTCAAGAGGCAAAAAGCTTGGGTCCTCCTCAATCTGCTGTAGAGGCCACTCGCCAAATGTTGAGAACAAAGAGGCTCAGCTCCAAAGTCAATTATGATCGCTTGGAAAAATTATTTGATGAACCTGTGGCTCCAGAGAATCCCAAGAAAGTACGATTTGAGCTACCCTCTGATAATCATGATAATTTTGAGTCAAAGGTAGAGGACAAAATAAAGGATGATGAAGTGGGATCAGTGGACGAATTTGAGGATGGTGGTATGGATGGAGAATATGAAAATACTTCGTATCAAGAAAATGCAGACGAGACATATGACTATGAATATGATGGTTATAGCTATGATTATTAG 1854 0.4105 MVYCDHCWKNVSGLRVDDGPLCCSECGKVLEDFHFSQEPTFVKNAAGQSKLSGHYVRTIQSEYSASRQRTLDRAYDDIKYLSFNLGVNDDNMANQALAFYRIALERNFTRGRKSEQVQAACLYIAFRENNKPYLLIDFSNYLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIYKYTNNLLKQRNVLVSETALSVIASMKRDWMQTGRKPSGLCGAALYMSALAHGFKCSKSDILRIVHVCEATLTKRLVEFENTESASLTIDELNTMAKEHEKNPIKIPDGELNKCASKDLLCEHKDSGVPYFALGLCETCYKDFDKLSGGLGGGLDPPAFQRAERERMTKSHSEESANKSDDLAKASTGACESQIDELHASEPESIGEAFISLSLSLHFSAYNGEHDESHKEDESESFSDIDDHEVDGYLLHNEVEKHYRKTMWEHINREYLEEQAAKEAAAAASKKNFEANFQNCSEDYLAARELAASATAAVAKSRKEMKQRRAQEAKSLGPPQSAVEATRQMLRTKRLSSKVNYDRLEKLFDEPVAPENPKKVRFELPSDNHDNFESKVEDKIKDDEVGSVDEFEDGGMDGEYENTSYQENADETYDYEYDGYSYDY. 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03893 617 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 532 IPR000812 GO:0006352|GO:0070897
Seca2g03893 617 MobiDBLite consensus disorder prediction 551 579 - -
Seca2g03893 617 SMART cyclin_7 176 259 IPR013763 -
Seca2g03893 617 SMART cyclin_7 76 158 IPR013763 -
Seca2g03893 617 FunFam Transcription factor IIIB subunit 173 262 - -
Seca2g03893 617 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Seca2g03893 617 MobiDBLite consensus disorder prediction 341 368 - -
Seca2g03893 617 MobiDBLite consensus disorder prediction 341 358 - -
Seca2g03893 617 Gene3D - 63 165 - -
Seca2g03893 617 Gene3D - 173 265 - -
Seca2g03893 617 SUPERFAMILY Cyclin-like 74 163 IPR036915 -
Seca2g03893 617 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Seca2g03893 617 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Seca2g03893 617 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Seca2g03893 617 MobiDBLite consensus disorder prediction 495 517 - -
Seca2g03893 617 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Seca2g03893 617 Pfam Transcription factor TFIIB repeat 170 259 IPR013150 GO:0017025
Seca2g03893 617 MobiDBLite consensus disorder prediction 551 617 - -
Seca2g03893 617 Gene3D Single helix bin 408 459 - -
Seca2g03893 617 SUPERFAMILY Cyclin-like 172 268 IPR036915 -
Seca2g03893 617 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Seca2g03893 617 CDD CYCLIN_TFIIIB90_rpt1 70 160 - -
Seca2g03893 617 Pfam Brf1-like TBP-binding domain 416 542 IPR011665 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03893 Seca-Chr2 119890135 119902712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03893 1 526 Inorganic Solute Cotransporters AT2G01280 41.917 1.93e-113 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03893 K15196 - gmx:100789154 764.992