Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03876 ATGGCTGAATCATTTGTCTCTGATGTTGCTCATTCACTACTGGGGAAGCTTGCTTCTTATGCCTATGAAGAAGCTTCTCGAGCCTATGGTGTCTATGATGATCTGCAACGGTTCAAAGACACTTTGTCAATTGTCAAAGGTGTGCTATTGGATGCTGAAGAGAAGAAGGACAAGAAGCATGGGTTGCGTGAATGGTTGAGGCAGATCGAAAACATCTGCTACCATGCTGAAGATGTCTTGGATGGATTTGAGTTCCAAAACAAGCGAAACCAAGTTGTCAAAGCTTCTGGCAGCACCAGCATGAAGGTAGGCCACTTCTTTTCTTCACACAATCCTCTTGTTTTCCGTATAATGATGGCTCATCAAATAAAAAATGTTAGGGATAGATTGGAGAAGGTAGTAGCTGATGGGAACAGGTTTGGTCTTGAGAGAAGAATTGATGTTGATCCCAGACTTGTTCTGCAAAAGAGAGAAATGACTTATTCCCATGTTTATGCTTCTGGTATGATAGGAAGGGAGGATGATATGGAAGAAATTGTCCAGCTTTTGATGCAACCTCACCCTGATGGGGATGGTGATGGTGATAAAAGTCTCTGTGTTATTCCCATAGTGGGAATTGGAGGCTTGGGGAAGACCACACTTGCAAAGTTGGTGTTCAATGATAAGAGGATGGATCAACTTTTCCAATTGAAAATGTGGGTGTGTGTGTCTGATGATTTTGACATTAGGCAGATAGTTATTAAGATCATCAAATCTGCTTCTGCTTCAGCTTCAGCTCCAACAATTGCTCATGCTCATCAAGAAAACATCAACAACTTAGATATGGACCAGCTAGTAAGTCATCTTACATATAAACTTTCTGGTCAAAAGTTTTTACTTGTCTTAGATGATATATGGAAGGTTGATCGTGCCAAATGGATTGAGTTGAAAGATTTGATAAAAGTAGGTGCAGCAGGAAGTAAAATCTTAGTCACTACACGTAGCAACTCAATTTCTTCAATGATGGGGACGGTTGATCCATATGTTTTGGAAGGCCTTTCTCCAGAGAATTGTTTATCTCTTTTTGTCAAATGGGCATTTAAGGAAGGTGAAGAAAAAAAATATCCAAATCTAGTGGAGATTGGAAAAGAAATTGTCAAAAAATGTCATGGGGTTCCACTAGCTGTGAGAACCTTAGGAAGTTCACTATTCACAAAAATTGATGTAGAGAAGTGGGAATTGATAAGAGACTCTGAGATATGGGAGTTAGAACAAAAGGAAGATGATATTCTACCTGCTCTCAAGCTAAGTTATGATCAGATGCCATCCCATTTAAGGCATTGCTTTACTTACTTTTCCCTTTTTCCCAAAGATCATGACTTTTATGTTGAGTATGTGAAAAATCTTTGGCTGGCCCTTGGATTACTTCAATCCCAAAATGGAAGTCAAAAGACAAATGATATTGCAAGAGAATATATTGATGAGTTACACTCAAGATCATTTATTCAAGATTTCGAAGAGTTTGGCCACAATAACTACTCTTTCAAAGTACATGATTTGGTACATGATCTTGTCGTGTATGTTGCGAATGAGGAGTTTGTAGTGGTAAACTCCCATACTCGGAATATACCTGAGCAAGTAAGGCATTTATCAATTTTAGAAACTGATTCACTTGACCATGCTTTGTTCCCCAAGTCCAAAAGTGTGAGAACTATCCTATTTCCCATCGAAGGAGTGGGTCTTAAAAGTGAAACTCTTTTGGATACATGGCTATCGAGATACAAATACTTACGGTGTTTAGATTTAAGTGATTGTTCATTTGAGACACTATCTAATTCAATTGTGAAATTGGAGCATATGCGAGCTCTCAACCTTTCAGGTAATTGCAAAATTAAAAGACTTCCACATTCTATATGCAAGCTCCATAATTTGCAATTTTTGTCAGTCGAAAGATGCATGGAGCTTGAAACATTGCCTAAAGGATTAGGGAAGTTGATCAGCCTTCGAGTACTGTATATAACCACAAAACAATCAGTTTTGGCACAAAATGAATTTGCAAGCTTGACCAATCTTAAAGTGTTGGGTTTTTCTCATTGTGACAATTTGAAGATTTTGTTCAACGGGGCACAGCTCAATTCCCTTGAAGAATTGTATGTGGATTCATGTGGGAGCCTAGAGTCCTTACCGCTTTATATTCTCCCTCAATTACATTCTCTGTCTGTAGGAGACTGTAAGATGTTAAAACTGTCATTGAAGGACGAAAGCCCAATGGGGAACTCTCAGATGGTACAACAGTCAGTGAACCATGAAAACCCAATCCAAAGACTGAGAATGAAAAATCTGTATCTTTGGGGTTTTCCAGAGCTTGAGACGTTGCCTCAATGGATTGAAGGAGTTGCAGACACTTTACATACCTTGAAAATTTTTAATTTTTCTAATTTGAAGATGCTTCCTGAGTTCCTTACAACAATGACTAATCTTAAGATACTCAATATTATTGAATGTCCTCAACTGTTGAGTCTTCCAAGTGACATGCATCGCCTCACTGCCCATCTTGAAGAATTGAGGATAGATGGTTGTCCTGAATTGTGCCGAAAATGTCTGCCGCAATGTGGTGAGTATTGGCCCATCATTGCTCACATCAAAAGAGTTGTCATTGAAGAACCAAGACACGAGGAGGAGAAATGA 2667 0.3888 MAESFVSDVAHSLLGKLASYAYEEASRAYGVYDDLQRFKDTLSIVKGVLLDAEEKKDKKHGLREWLRQIENICYHAEDVLDGFEFQNKRNQVVKASGSTSMKVGHFFSSHNPLVFRIMMAHQIKNVRDRLEKVVADGNRFGLERRIDVDPRLVLQKREMTYSHVYASGMIGREDDMEEIVQLLMQPHPDGDGDGDKSLCVIPIVGIGGLGKTTLAKLVFNDKRMDQLFQLKMWVCVSDDFDIRQIVIKIIKSASASASAPTIAHAHQENINNLDMDQLVSHLTYKLSGQKFLLVLDDIWKVDRAKWIELKDLIKVGAAGSKILVTTRSNSISSMMGTVDPYVLEGLSPENCLSLFVKWAFKEGEEKKYPNLVEIGKEIVKKCHGVPLAVRTLGSSLFTKIDVEKWELIRDSEIWELEQKEDDILPALKLSYDQMPSHLRHCFTYFSLFPKDHDFYVEYVKNLWLALGLLQSQNGSQKTNDIAREYIDELHSRSFIQDFEEFGHNNYSFKVHDLVHDLVVYVANEEFVVVNSHTRNIPEQVRHLSILETDSLDHALFPKSKSVRTILFPIEGVGLKSETLLDTWLSRYKYLRCLDLSDCSFETLSNSIVKLEHMRALNLSGNCKIKRLPHSICKLHNLQFLSVERCMELETLPKGLGKLISLRVLYITTKQSVLAQNEFASLTNLKVLGFSHCDNLKILFNGAQLNSLEELYVDSCGSLESLPLYILPQLHSLSVGDCKMLKLSLKDESPMGNSQMVQQSVNHENPIQRLRMKNLYLWGFPELETLPQWIEGVADTLHTLKIFNFSNLKMLPEFLTTMTNLKILNIIECPQLLSLPSDMHRLTAHLEELRIDGCPELCRKCLPQCGEYWPIIAHIKRVVIEEPRHEEEK. 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03876 888 Gene3D Ribonuclease Inhibitor 522 873 IPR032675 -
Seca2g03876 888 CDD RX-CC_like 2 133 IPR038005 -
Seca2g03876 888 Gene3D - 345 429 IPR042197 -
Seca2g03876 888 Pfam Rx N-terminal domain 11 98 IPR041118 -
Seca2g03876 888 Gene3D - 430 520 IPR036388 -
Seca2g03876 888 SUPERFAMILY L domain-like 509 868 - -
Seca2g03876 888 Pfam NB-ARC domain 173 432 IPR002182 GO:0043531
Seca2g03876 888 FunFam Probable disease resistance protein At1g63360 431 520 - -
Seca2g03876 888 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 444 IPR027417 -
Seca2g03876 888 PRINTS Disease resistance protein signature 285 299 - -
Seca2g03876 888 PRINTS Disease resistance protein signature 679 695 - -
Seca2g03876 888 PRINTS Disease resistance protein signature 382 396 - -
Seca2g03876 888 PRINTS Disease resistance protein signature 200 215 - -
Seca2g03876 888 Gene3D - 10 124 - -
Seca2g03876 888 Gene3D - 155 339 IPR027417 -
Seca2g03876 888 PANTHER DISEASE RESISTANCE PROTEIN RP 63 785 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03876 Seca-Chr2 119559861 119562527 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03876 201 851 WRKY Transcription Factor Family AT5G45050 22.331 4.53e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03876 - - gmx:100795479 1217.6