Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03870 ATGTCCCTTGAAGACTCCCTAAGATCTCTATCCCTTGATTACCTCAACCTTCTCATCAATGGACAAGCCTTCAGCGACGTCACTTTCAGTGTCGAAGGCCGTTTAGTCCACGCTCACCGCTGCATCCTCGCAGCACGGAGCCTCTTCTTCAGGAAATTCTTCTGCGGACCTGACCCGCCTTCAGGTCTCGACCCACCCGGTTCAACGCGGGTCAACTCGCCCGTGTCAACCAGGTCCGGTGTCATCCCAGTTAACTCAGTGGGTTACGAGGTGTTCTTGCTGTTGCTTCAGTTTCTATACAGTGGCCAAGTCTCTATTGTCCCTCAGAAGCATGAGCCTAGGCCTAATTGTGGAGAGCGTGGTTGCTGGCACACGCATTGCACCTCAGCCGTTGATCTTGCCCTTGACACACTCTCAGCCGCTAGATATTTCGGTGTTGAACAGCTCGCATTGCTCACTCAGAAACAACTAACAAGCATGGTAGAGAAGGCCTCAATTGAAGATGTAATGAAAGTTCTCTTAGCTTCAAGAAAACAAGACATGCACCAACTATGGACAACTTGTTCCCACTTAGTAGCAAAATCCGGTCTTCCCCCAGAAGTTCTAGCCAAACACCTTCCAATTGATATAGTAGCAAAAATCGAAGAGCTTCGTCTTAAATCTTCCTTAGCACGCCGTTCCTTAATCCCACACCACCACCCTCACCACCACCACCACCCTCACGACCTCACCGTCGACCTTGAGGATCAGAAAATCCGGAGAATGAGAAGAGCACTTGACTCCTCCGATGTGGAACTCGTGAAACTCATGGTAATGGGAGAAGGCCTTAACCTTGATGAAGCATTAGCCTTACCTTACGCAGTTGAGAATTGCAGCAGAGAAGTGGTGAAAGCTTTGCTAGAACTCGGTGCAGCTGATGTTAACTACCCATCTGGTCCTTCCGGCAAAACGCCGTTACATATCGCCGCGGAAATGGTCTCGCCGGACATGGTGGCGGTGCTGTTAGACCACCATGCTGATCCTAATGTCAGAACTGTGGATGGTGTCACTCCTTTGGACATTCTCAGAACCCTAACCTCGGATTTCCTCTTTAAAGGTGCTGTCCCTGGGTTAACCCATATAGAACCAAATAAACTAAGGTTGTGTTTGGAGCTTGTTCAATCAGCGGCTCTAGTGATGTCAAGAGAAGAAGGGAATGCTAATAATAATGCTCCTTCTTCAGAAACTACCATATACCCTCCTAATGATCAAGATCATCATAGCAGTGGAGGAGGAAACAACAACAACGTTGGTAACCTTAACTTGGATTCTAGGTTGGTGTATCTTAACCTTGGTGCTACGGTGGGTCAAATGAGTGGTGATGATGATAGCAGCCATGGTAGTCATCACAGGGAAGCCATGAACCCCGCCATGTACCATCACTCACATGACTTCTAG 1437 0.485 MSLEDSLRSLSLDYLNLLINGQAFSDVTFSVEGRLVHAHRCILAARSLFFRKFFCGPDPPSGLDPPGSTRVNSPVSTRSGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALDTLSAARYFGVEQLALLTQKQLTSMVEKASIEDVMKVLLASRKQDMHQLWTTCSHLVAKSGLPPEVLAKHLPIDIVAKIEELRLKSSLARRSLIPHHHPHHHHHPHDLTVDLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALPYAVENCSREVVKALLELGAADVNYPSGPSGKTPLHIAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVMSREEGNANNNAPSSETTIYPPNDQDHHSSGGGNNNNVGNLNLDSRLVYLNLGATVGQMSGDDDSSHGSHHREAMNPAMYHHSHDF. 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03870 478 Gene3D Potassium Channel Kv1.1; Chain A 4 194 IPR011333 -
Seca2g03870 478 Gene3D - 246 362 IPR036770 -
Seca2g03870 478 FunFam regulatory protein NPR5 isoform X1 4 194 - -
Seca2g03870 478 FunFam regulatory protein NPR5 isoform X2 245 362 - -
Seca2g03870 478 SMART BTB_4 25 161 IPR000210 GO:0005515
Seca2g03870 478 Pfam Domain of unknown function (DUF3420) 196 256 IPR024228 -
Seca2g03870 478 ProSiteProfiles BTB domain profile. 25 108 IPR000210 GO:0005515
Seca2g03870 478 MobiDBLite consensus disorder prediction 456 478 - -
Seca2g03870 478 Pfam BTB/POZ domain 16 111 IPR000210 GO:0005515
Seca2g03870 478 SUPERFAMILY POZ domain 8 159 IPR011333 -
Seca2g03870 478 CDD BTB_POZ_NPR_plant 8 161 - -
Seca2g03870 478 SMART ANK_2a 314 343 IPR002110 GO:0005515
Seca2g03870 478 SMART ANK_2a 279 309 IPR002110 GO:0005515
Seca2g03870 478 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 476 IPR044284 GO:0099402
Seca2g03870 478 Pfam Ankyrin repeats (3 copies) 262 344 IPR002110 GO:0005515
Seca2g03870 478 ProSiteProfiles Ankyrin repeat profile. 314 346 IPR002110 GO:0005515
Seca2g03870 478 SUPERFAMILY Ankyrin repeat 273 357 IPR036770 -
Seca2g03870 478 ProSiteProfiles Ankyrin repeat region circular profile. 314 344 - -
Seca2g03870 478 MobiDBLite consensus disorder prediction 451 478 - -
Seca2g03870 478 MobiDBLite consensus disorder prediction 397 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03870 Seca-Chr2 118909528 118911774 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Seca2g03870 BTB 1.5e-14 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03870 K14508 - qsu:112012060 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03870 2 118909528 118911774 Seca2g03870 2 118909528 118911774 ECH
Seca2g03870 2 118909528 118911774 Seca8g04768 8 132968686 132971728 PCT