Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03858 ATGGGTAGTAGAAGTAGAGCTGTGAACGTTAACACTGAGGATACTGACAAGGTTGTGAACGGGATGCCAAGCTACGCTCCTCCATTGCCTTCTTCTTCTAGTTCCATGGGCATAGAAGCAACTAATGTTCATCCTTCTCGAATTTCTGAATTTGGAACCCTTGAACAATCTCTTGGATTTCGCATTGAGGATACCATCAATCTCAGCAGAAATCCAGTGTTTAATCAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATATTCAATTTGGTGCTTTAAGCAAGATGCAGTCAATTGCAACATCGGATATAAACCTCTCTGCTGCAATTGCTGGGTCCCAGACATTGCCATTACAAAAAGACTCACAACCAAATCTGGCTTCGACATCCGCTGGCCATCGTGAGAACTGGGGAGAGTCCAACATGGCTGATTCAAGCCCTAGGACTGATACTTCAACAGATGATACAGATGATAAAAATCAAAGGCCTGAAAGGGATGAATCCAGTGAGAGGTCAAAAGATAAAACAGATCAAAAGACATTAAGACGGCTAGCTCAAAATCGTGAGGCTGCCAGAAAAAGCCGACTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGTAGTAGGCTGAAACTGACCCAACTGGAGCAAGAGCTCCAGCGAGCTCGCCAGCAGGGAATATTTATTTCAAGCTCTGGAGATCAGGCCCATTCAATGAGTGGAAATGGTATTTAA 735 0.4354 MGSRSRAVNVNTEDTDKVVNGMPSYAPPLPSSSSSMGIEATNVHPSRISEFGTLEQSLGFRIEDTINLSRNPVFNQMKSNSQALGADIQFGALSKMQSIATSDINLSAAIAGSQTLPLQKDSQPNLASTSAGHRENWGESNMADSSPRTDTSTDDTDDKNQRPERDESSERSKDKTDQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGI. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03858 244 MobiDBLite consensus disorder prediction 150 191 - -
Seca2g03858 244 MobiDBLite consensus disorder prediction 117 199 - -
Seca2g03858 244 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 177 221 IPR004827 GO:0003700|GO:0006355
Seca2g03858 244 Coils Coil 198 225 - -
Seca2g03858 244 SMART brlzneu 175 238 IPR004827 GO:0003700|GO:0006355
Seca2g03858 244 SUPERFAMILY Leucine zipper domain 179 222 IPR046347 GO:0003700|GO:0006355
Seca2g03858 244 FunFam BZIP family transcription factor 178 227 - -
Seca2g03858 244 PANTHER TRANSCRIPTION FACTOR TGA9 120 237 - -
Seca2g03858 244 MobiDBLite consensus disorder prediction 1 36 - -
Seca2g03858 244 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 182 197 IPR004827 GO:0003700|GO:0006355
Seca2g03858 244 Gene3D - 178 230 - -
Seca2g03858 244 MobiDBLite consensus disorder prediction 1 18 - -
Seca2g03858 244 Pfam bZIP transcription factor 179 219 IPR004827 GO:0003700|GO:0006355
Seca2g03858 244 MobiDBLite consensus disorder prediction 117 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03858 Seca-Chr2 118520268 118523928 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03858 142 243 bZIP Transcription Factor Family AT3G12250 76.364 1.35e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca2g03858 bZIP_1 3.5e-07 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03858 K14431 - gmx:778136 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03858 2 118520268 118523928 Seca2g03858 2 118520268 118523928 ECH