Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03846 ATGGCTCCCAATTCGCCTTCAAGAAAAGAGTTCAATCCCACAGACGATCAACTCCTCCGATTGTTCCTCTACAACAAGGTCCACGGGAAACCTTTCCCCAGCAATGTCACCATTCACGAATGTGATTTGTACGGTGAAAAGAACCCTTGGGAGATTTGGCAACAATTTGGAGATGGTTCCCACTCATACAACGGTGGAAAGGATCTCTATTTCTTCACCACACTAAAGAAAAAGTCTCCATCTAGGACCTCACGTAGTCGACGCTCGGTTCGCACCATTGGCTGTGGTTCTTGGGAAGGTGAAGACACAGGCAAAATCATAGTGGCCAGTGGCACCAACCAACTCCTCGGTATCAAGAAACGGTATCGTTTTGAGAAGAGTGGCACTGACCACGATGGTGGGTGGATCTTGCATGAATACAGCCTTGGCCCATCTATGCTAAGCAATCCTCATGCAATTAATTGGGTTCTATGCAGATTTAGAAAGAATTTGAAAAATGAGAGTAGCGTCACAAGACAAAGGAAAACCATTGTTCTTGCACTTGCTTCTGCTACCGCTGAATCTGAGAATAATAATGTTCGGCTGGGGGAAGATATTTTCCTCCGAGGACCAAGAAACCATCTAGAGAGTGGAGTTAACAGAACCAAGGTGGTTGAAACTACCAGTACTAAAAGCAAGTCTGAATATAAGGAAGAGGATGGTAATGTCACTATGTTTGGGCCGGAGTCATTTTCCATGGAGTTGAGAGAGTTTGAAGGATGTTTGATCCAAGAGGAAGACATCCCCTTACTTCCTAATCCATTTTACTTGGACCTATTGTTGGAAATGATTGATATTAAGTACATCAAAAGTAGTAGTAAGTAG 864 0.4375 MAPNSPSRKEFNPTDDQLLRLFLYNKVHGKPFPSNVTIHECDLYGEKNPWEIWQQFGDGSHSYNGGKDLYFFTTLKKKSPSRTSRSRRSVRTIGCGSWEGEDTGKIIVASGTNQLLGIKKRYRFEKSGTDHDGGWILHEYSLGPSMLSNPHAINWVLCRFRKNLKNESSVTRQRKTIVLALASATAESENNNVRLGEDIFLRGPRNHLESGVNRTKVVETTSTKSKSEYKEEDGNVTMFGPESFSMELREFEGCLIQEEDIPLLPNPFYLDLLLEMIDIKYIKSSSK. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03846 287 ProSiteProfiles NAC domain profile. 5 163 IPR003441 GO:0003677|GO:0006355
Seca2g03846 287 SUPERFAMILY NAC domain 10 161 IPR036093 GO:0003677|GO:0006355
Seca2g03846 287 Gene3D NAC domain 14 168 IPR036093 GO:0003677|GO:0006355
Seca2g03846 287 PANTHER NAC TRANSCRIPTION FACTOR 56 10 207 - -
Seca2g03846 287 Pfam No apical meristem (NAM) protein 10 142 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03846 Seca-Chr2 118058463 118060507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03846 11 160 NAC Transcription Factor Family AT5G13180 33.750 2.49e-16 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca2g03846 NAM 4.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03846 - - mtr:11433340 239.58