Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca2g03837 | ATGATCTCCTTCTCCAAAAACAATAATTCCAAGCCAGTTCCAACACCACCATCCTCCTCAGATGAATGCTATTGCATCCTCCCTTGCAAAACCAAGGTGGAGGATGTGACCACAACCTCAAAAAAACCAAAAGGGAGGCCTCTTGGGTCCAAGAACAAGCCCAAACCACCCATCCCTATCAAACAAGACAGTGAACCACTCCTTAAACCAATCATCATTGAAATACCCATTGGAAATGATATCATTGAGGCACTCATCAAGCTTTCTCATCGTCTTCGTGTCGGTATCTCGTTGTTAAGTGGTTCAGGTTGTGTCTCTAGCGTTGCCCTTCGCCACCCTTTGTCTCATCTCCGAGGAAACTTCAACATTCTTTCTCTCATTGGTACTTATATGAGTGGTTGTTTTCCTCCACTTTCCTCTTCCACCCGTACCTTGTCCTCTTTTTCGATTCACCTCTCAGATTACCAGAGTCAAGCCTTTAGTGGGGTTATTGGAGGAAAGGTTGTGGCCGCAAGTATTGTGGTGATCACGGCCTTTATGTTCAAGAAATTTGAGTATCACAAAGTCCCCTTCATTAATGGAAGTGTTGAGGAAGTTGAAGAGGATGACTCTGGTGTTAGGTGA | 624 | 0.4455 | MISFSKNNNSKPVPTPPSSSDECYCILPCKTKVEDVTTTSKKPKGRPLGSKNKPKPPIPIKQDSEPLLKPIIIEIPIGNDIIEALIKLSHRLRVGISLLSGSGCVSSVALRHPLSHLRGNFNILSLIGTYMSGCFPPLSSSTRTLSSFSIHLSDYQSQAFSGVIGGKVVAASIVVITAFMFKKFEYHKVPFINGSVEEVEEDDSGVR. | 208 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca2g03837 | 207 | ProSiteProfiles | PPC domain profile profile. | 64 | 200 | IPR005175 | - | |
| Seca2g03837 | 207 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 69 | 182 | IPR005175 | - | |
| Seca2g03837 | 207 | CDD | DUF296 | 69 | 179 | IPR005175 | - | |
| Seca2g03837 | 207 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
| Seca2g03837 | 207 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Seca2g03837 | 207 | Gene3D | - | 68 | 199 | - | - | |
| Seca2g03837 | 207 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 68 | 190 | - | - | |
| Seca2g03837 | 207 | MobiDBLite | consensus disorder prediction | 35 | 62 | - | - | |
| Seca2g03837 | 207 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 | 20 | 198 | IPR014476 | GO:0003680 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca2g03837 | Seca-Chr2 | 117898708 | 117899331 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Seca2g03837 | 41 | 206 | AT-hook Motif Nuclear Localized (AHL) Family | AT5G49700 | 35.057 | 7.49e-32 | 115 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca2g03837 | - | - | lang:109328424 | 142.124 |