Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03834 ATGCCTTACCTTGTCCGCGAAAACCTATTCATCGGCAACATCGGCGACGCGGCGGAGATTCTCCAAAACGCCACCGTTCAGCACCGTGTGACGCACATCCTCTCCGTTCTTAGTTCCGCTTCCATCTCCTTCTTCTCCGAATGGCGAACCGGCCTATCAATCCCCGCCAAGGAGATCGCCAAGGTCCACGCCGGTGAAGTCGCCGCCAAGAGCGCTCTCTCGCCGGAGAAGCTCCTCTACTCGCTCGAGTACGCCGGCAATGACTTGAAGCTCGTGAGGATGGCCGTTCCTCTCAAGGACACCGAGAACGAGGATTTGTTGGATTACCTCGAAGTTTGCATCGATTTCATTGATCGTAGCAGGAAGGAAGGTGGTTCCGTTTTGGTCCACTGTTTCGCCGGAGTTTCCAGAAGTGCGGCGGTTATTACTGCGTATTTGATGAGAACCGAACGTCTATCACAAGAAGGTGTGAAACCAATACTTTGTTTAAAGTCTTCCGGGACTACACGTTTGGTACATGCAAGTAGCTTTCTTCTTATTTTTACAATGATTTTTAGTTTACTTTAG 567 0.5062 MPYLVRENLFIGNIGDAAEILQNATVQHRVTHILSVLSSASISFFSEWRTGLSIPAKEIAKVHAGEVAAKSALSPEKLLYSLEYAGNDLKLVRMAVPLKDTENEDLLDYLEVCIDFIDRSRKEGGSVLVHCFAGVSRSAAVITAYLMRTERLSQEGVKPILCLKSSGTTRLVHASSFLLIFTMIFSLL. 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03834 188 SMART dsp_5 1 177 IPR020422 GO:0006470|GO:0008138
Seca2g03834 188 Pfam Dual specificity phosphatase, catalytic domain 90 154 IPR000340 GO:0008138|GO:0016311
Seca2g03834 188 Gene3D Protein tyrosine phosphatase superfamily 1 172 IPR029021 -
Seca2g03834 188 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 107 153 IPR000387 GO:0016311|GO:0016791
Seca2g03834 188 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 4 154 IPR029021 -
Seca2g03834 188 ProSitePatterns Tyrosine specific protein phosphatases active site. 129 139 IPR016130 GO:0016311|GO:0016791
Seca2g03834 188 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER 1 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03834 Seca-Chr2 117878975 117884708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03834 1 145 Protein tyrosine phosphatase (PTP) family AT3G23610 28.966 2.10e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03834 K14819 - gmx:100804683 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03834 2 117878975 117884708 Seca2g03834 2 117878975 117884708 ECH