Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03833 ATGGGACTCTGTCATGGAAGACCCATTGAAACCTCACACACAGAAGGAGAAAACTCAGTTTTCCCAAGTAACAAACAGGTATTGTCACTACCACCAAGTTCCCACACCACCAAATCACCATCAAAGTTTCCATTTTTCAGCCCTAGTCCCTTGCCAAACCTCTTCAAGAACTCACCAGCGAACTCTAGTGTGAGCTCAACCCCTCTGCGCATCTTCAAACGCCCCTTTCCTCCTCCTTCGCCGGCCAAGCACATTCGGGCCTTGCTGGCCCGGCGCCATGGCTCAGTGAAGCCCAATGAGGCCACCATCCCTGAAGGGAGTGAGTGTGAGGTTGGGTTGGACAAGAGTTTTGGGTTCTCAAAGCACTTCACGGCTCATTATGAGCTTGGACAAGAAGTGGGGCGTGGCCATTTTGGATACACTTGCTCTGCCAAGGGAAAGAAAAGCAGTTTCAAGGGCCATGATGTTGCTGTCAAAGTCATTCCAAAATCCAAGATGACAACAGCAATTGCTATAGAGGATGTAAGGAGAGAAGTAAAGATATTGCGAGCTCTAACTGGGCATAAGAATTTGGTGCAGTTCTATGAAGCCTATGAAGATGATGACAATGTTTATATAGTTATGGAGTTATGCAAAGGAGGCGAACTGCTAGATAAGATTCTTTCCCGGGGTGGAAAGTACTCAGAAGAGGATGCCAGAGTTGTTTTGATTCAGATATTAAGTGTGGTAGCTTATTGTCATCTGCAGGGTGTTGTTCACCGTGATCTCAAGCCGGAGAATTTTCTTTTCTCTTCTGAAGATGAGAATTCCACGCTGAAGGCCATTGATTTTGGACTGTCTGACTATGTAAAGCCAGAGGAGAGGTTGAATGATATTGTTGGAAGTGCATATTATGTTGCTCCTGAAGTTTTGCATAGATCTTATGGGACAGAAGCAGATATGTGGAGCATTGGTGTAATTGCGTATATTCTTTTATGTGGAAGCCGACCTTTTTGGGCCAGGACAGAATCTGGCATATTTCGGGCTGTCCTGAAGGCAGATCCAAGTTTTGATGAAGCTCCTTGGCCTTCTTTATCACCTGATGCAAAAGATTTTGTAAAGAGGCTGTTGAATAAGGATTTTCGTAAAAGACTAACTGCAGCTCAGGCTCTCAGTCATCCATGGCTGGCGAATCACTGTGATGATATGAGGATACCATTTGATATGATAATCCACAAGCTTGTTAAAACTTACATATGCTCATCTTCTTTACGCAAATCAGCGTTGGGGGCTCTTGCAAAGACATTAACATTAGTGCAGTTAGCATATCTTAGAGAACAATTTACTCTGTTAGGGCCAAACAAAAATGGGCTAATCTCTATGCAGAACTTCAAGACGGCTATTTTAAGGAGTGCCACTGATGCCTCAAAGGATTCAAGGGTCTTAGATTATGTGAACATGAAAGTTGCTTCCCTGGAAAGTGAATTGTTACTATTCATGTTGCAGGTTGGTTCAATCCAATATCGGAAATTAGATTTCGAGGAATTTTGTGCTGCTGCTATAAGTGTCCATCAACTAGAAGGAATGGACAGCTGGGAGCAACATGCAAGGCGTGCCTATGAGCTGTTTGAAAAGGATGGAAATAGGCCAATCATGATTGAAGAGCTTGCCTCGGTACTCTTCTTGTTCAATACCATTTTGTCTAATGAACTAATATATTTAGATTGTGATTTTATTTTGTTTTAA 1725 0.4307 MGLCHGRPIETSHTEGENSVFPSNKQVLSLPPSSHTTKSPSKFPFFSPSPLPNLFKNSPANSSVSSTPLRIFKRPFPPPSPAKHIRALLARRHGSVKPNEATIPEGSECEVGLDKSFGFSKHFTAHYELGQEVGRGHFGYTCSAKGKKSSFKGHDVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHKNLVQFYEAYEDDDNVYIVMELCKGGELLDKILSRGGKYSEEDARVVLIQILSVVAYCHLQGVVHRDLKPENFLFSSEDENSTLKAIDFGLSDYVKPEERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFDEAPWPSLSPDAKDFVKRLLNKDFRKRLTAAQALSHPWLANHCDDMRIPFDMIIHKLVKTYICSSSLRKSALGALAKTLTLVQLAYLREQFTLLGPNKNGLISMQNFKTAILRSATDASKDSRVLDYVNMKVASLESELLLFMLQVGSIQYRKLDFEEFCAAAISVHQLEGMDSWEQHARRAYELFEKDGNRPIMIEELASVLFLFNTILSNELIYLDCDFILF. 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03833 574 FunFam CDPK-related kinase 1 120 215 - -
Seca2g03833 574 SUPERFAMILY Protein kinase-like (PK-like) 116 419 IPR011009 -
Seca2g03833 574 Gene3D - 430 514 - -
Seca2g03833 574 FunFam Calcium-dependent protein kinase SK5 299 394 - -
Seca2g03833 574 Gene3D Phosphorylase Kinase; domain 1 120 216 - -
Seca2g03833 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 251 263 IPR008271 GO:0004672|GO:0006468
Seca2g03833 574 PANTHER SERINE/THREONINE-PROTEIN KINASE 113 551 - -
Seca2g03833 574 SMART serkin_6 127 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g03833 574 Gene3D Transferase(Phosphotransferase) domain 1 217 407 - -
Seca2g03833 574 ProSiteProfiles Protein kinase domain profile. 127 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g03833 574 MobiDBLite consensus disorder prediction 13 42 - -
Seca2g03833 574 CDD STKc_CAMK 126 388 - -
Seca2g03833 574 MobiDBLite consensus disorder prediction 1 42 - -
Seca2g03833 574 FunFam CDPK-related kinase 3 119 291 - -
Seca2g03833 574 ProSitePatterns Protein kinases ATP-binding region signature. 133 159 IPR017441 GO:0005524
Seca2g03833 574 Gene3D - 409 554 - -
Seca2g03833 574 SUPERFAMILY EF-hand 422 565 IPR011992 -
Seca2g03833 574 FunFam CDPK-related kinase 1 427 514 - -
Seca2g03833 574 Pfam Protein kinase domain 127 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03833 Seca-Chr2 117847909 117853580 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03833 1 555 EF-hand Containing Proteins AT3G50530 63.591 0.0 761
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca2g03833 Pkinase 8.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03833 - - gmx:100803625 936.406