Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03827 ATGCTCCAACAGATAGCCATGGACAACCCTGACCTTTTCCAATTCCTCACCACCAACAACAACAACGACGCCTCCTTCTTCAACGCAACCGCCATGATGCAACACAGCTTCTGTAGTTCCTCCAATTATTACCCCTTGGAACTCTCCGAAATTACCGATACACCCTCCCACCATGATAGGGCTCTCGCTGCTATGAGAAACCACAAGGAAGCTGAGAAGCGAAGAAGAGAGAGAATCAATTCCCACCTCGACCACCTTCGCACTCTCCTTCCTTGTAATTCCAAGACGGATAAGGCTTCACTTCTTGCGAAAGTGGTTCAGCGTGTGAAGGAGTTGAAGCAGCAAACCTCTGAAATCACTGAACTCGAAACGGTTCCTTCAGAAACCGATGAAATCACCGTCCTCTCCACCGGCGGCGACCATGCCGGCGGTGATGGGAGGCTCATATTCAAGGCTTCTTTGTGCTGTGAGGACCGTTCTGATCTCATCACTGACATCATAGAAATCCTCAAGTCTCTTCATCTGAAAACTCTCAAAGCTGAAATGGCCACGCTTGGAGGAAGAACTCGTAACGTTCTGCTGGTTGCTGCTGATAAAGAACACAGCATTGAATCAATCCATTTCCTTCAGAACTCACTCAAATCCTTGATAGATCGAAACAATTCCAGTGACAGGTCAAAACGACGCCGTGGGTTAGATCGAAGAATGATGGCTTAG 717 0.4798 MLQQIAMDNPDLFQFLTTNNNNDASFFNATAMMQHSFCSSSNYYPLELSEITDTPSHHDRALAAMRNHKEAEKRRRERINSHLDHLRTLLPCNSKTDKASLLAKVVQRVKELKQQTSEITELETVPSETDEITVLSTGGDHAGGDGRLIFKASLCCEDRSDLITDIIEILKSLHLKTLKAEMATLGGRTRNVLLVAADKEHSIESIHFLQNSLKSLIDRNNSSDRSKRRRGLDRRMMA. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03827 238 PANTHER TRANSCRIPTION FACTOR BHLH30 41 231 IPR045847 GO:0003700|GO:0006355
Seca2g03827 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 58 120 IPR036638 GO:0046983
Seca2g03827 238 FunFam transcription factor bHLH30 58 121 - -
Seca2g03827 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 112 IPR011598 GO:0046983
Seca2g03827 238 Gene3D - 58 124 IPR036638 GO:0046983
Seca2g03827 238 CDD bHLH_AtAIG1_like 59 134 - -
Seca2g03827 238 MobiDBLite consensus disorder prediction 220 238 - -
Seca2g03827 238 SMART finulus 69 118 IPR011598 GO:0046983
Seca2g03827 238 MobiDBLite consensus disorder prediction 219 238 - -
Seca2g03827 238 Pfam Helix-loop-helix DNA-binding domain 67 112 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03827 Seca-Chr2 117715926 117717130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03827 12 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 60.633 5.43e-77 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca2g03827 HLH 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03827 - - gmx:100802566 333.183
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03827 2 117715926 117717130 Seca2g03827 2 117715926 117717130 ECH