Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03816 ATGGACTCTGAAGAAGACTCGCCACATGGTTCTTCTTCTTCTTCTCACTCGGAGGAAACATACCTGGTGGGCTTCGTCTTAGCCGACATCGTGGGCCTCAAATACTACGCCGGCACCATAAGCGGCCGTGAAATGGTGGGCTTAGTCCGTGAGCCCCTCAACCCTCACGACCCAAACGCCATCAAGGTTTTCAACACCCGAACCGAACAAGTCGGTCACATCGAACGCTCCGTCGCCGCCGTCCTTTCCCCTCTCATCGACTCCGAACTCATCACCGTCGAAGGTATTGTCCCTAACTCTCGCTCCACCGCCACCAAGTTCCGTATGCCCTGTCAGGTTCATATTTTCGCCCAATTCTCTTCTTTCCCTGTCGTCATAGATGCATTCTCTGAATCCCCTTTGCATCTCATTTCCAACTCCCACCCCTCGTTTACCCTATCTGATTCCATCGCTGTCAAAGAAACCCGCGCCGACGATAGCTTCAAGAACTTGAACGCCATTTTCAAACTCGTCAATGAGCATCTCGCTGCTAAGGATTGTGTTCTCGAACCGCTCTTACCTCCCCCGAGTGTCATCAAATCGGAGCTTCTTCAACATCAGAAGGAAGCCCTTGGCTGGCTCGTTCACCGCGAAAATTCCGTTGACTTGCCGCCGTTTTGGGAGCAGAGAGATGCTATTTTCGTCAATGTGTTGACCAATTTCCTTACAGATTCAAGGCCTGAACCCTTGCGAGGTGGGATTTTTGCTGATGCTATGGGATTGGGGAAGACTTTAACTTTGCTTTCTTTAATTGCTTTTGATAAATGGGAGAAAATGGAATCGGGTAACAAGAAACGCAAGAGGCTGCTGGCAAGTTCAAGTGATGATGATTCATTGGAAATGGAAACAGAGGGAACTTTGGTTATTTGTCCTCCTTCTGTGATTTCCACATGGGTATTGCAATTGGAAGAACACACTCATCATGGGGCATTGAAGACGTACATGTATTATGGAGATAGAAGGACTAGGAAAGCTAAGGAACTCAAGCAGTATGATTTAGTGTTGACTACCTACTCTACTTTAGCCGTTGAGTTGCCATATTGCACCCCTGTGAATATGCTCAAGTGGAGGAGAATCATTTTGGATGAAGCACATACTATCAAGAATATCAATGCTGCACAGAGTAGAGCAGTTATTGAACTAAAGGCTAAGAGGAGATGGGCTGTCACAGGGACGCCAATTCAGAATGGTTCCTTTGATTTGTATTCTCTTATGGCATTTTTGCACTTTGAACCCTTTTCAGTAAAGAGCTATTGGCAGAGGTTGGTGCAACGCCCTCTTAATCAAGGCAAGGATGGAGGGCTTACACGCCTGCAGGTTTTGATGGGAGCGATTTCGTTAAGAAGAACAAAGGAAATGGCATTGGTGGGTCTGCCACCAAAAACTGTGGAGACTTATTATATTGCACTTTCTTGTGAAGAACGTAGACGGTATGATGAGGTGAAAGAGGAAGTAAAGGCGCTTTTGATACAGTATGAAGAAGATCGTAACACTCTAGTGAACGGTTATTCGGCTATTCTAAGTATGATTCTAAGACTTCGACAAATTTGTACTGATTATGCTTTGTGCCCTTCAAATTTCAAGTCACATCTACTCCCTTCAAGTGATATTGAAGATGTTTCTAAGAACCCTGAGCTGCTGCAAGCGTTAGTTAGGGTGCTGCAAGATGGTGATGATTTTGACTGTCCAATTTGTATATCTCCTCCAACGGATATCATAATTACATGCTGTGCTCACATTTTCTGCCGAGACTGTATTCTAAAAACTCTAAAACGCAGCAATCCCCGATGTCCTCTTTGTCGGCGCTCCCTCTCAGAATCTGACTTGTTCTCAGCACCTCCTGAAACCCCTGAAGTTGATATTACTAAACAGTCCTCGTCAGAAACAAGGGTATCTACAAAGGTGTCTACTCTGATAAAACTTCTTACAGAATCAAGAGATCAACATCCAACTGTAAAATCAGTTGTTTTTTCTCAATTTCGTAAATTGCTGGTGTTTCTGGAAGAGCCTCTAAAAGAAGCTGGTTTCAAGACTTTGCGGCTTGATGGGTCAATGAATGCTAAACACAGGGCTCGTGTTATTGAGCAATTTCAAGTCTCAGGAAAGGATGAGCCAATGGTTCTGCTTGCAAGTCTCAAGGCTTCAAGTTTAGGCATAAATCTTACAGCTGCCTCTAGGGTGTACTTAATGGAGCCATGGTGGAACCCTGGAGTGGAGGAACAGGCAATGGATCGCGTCCATCGCATTGGACAAAAAGAGGATGTGAAGGTTGTTAGATTTGTAGCTCTAAACAGCATTGAAGAGAAAATATTAATGTTGCAGGAGAAAAAGAAAGAACTGGCAGAGGAAGGGTGTAGGAGGGGATCAAAGGATGTACTTGGTATGGGCATAAATGATCTACGTTTCATTATGGAAGAGTAG 2460 0.448 MDSEEDSPHGSSSSSHSEETYLVGFVLADIVGLKYYAGTISGREMVGLVREPLNPHDPNAIKVFNTRTEQVGHIERSVAAVLSPLIDSELITVEGIVPNSRSTATKFRMPCQVHIFAQFSSFPVVIDAFSESPLHLISNSHPSFTLSDSIAVKETRADDSFKNLNAIFKLVNEHLAAKDCVLEPLLPPPSVIKSELLQHQKEALGWLVHRENSVDLPPFWEQRDAIFVNVLTNFLTDSRPEPLRGGIFADAMGLGKTLTLLSLIAFDKWEKMESGNKKRKRLLASSSDDDSLEMETEGTLVICPPSVISTWVLQLEEHTHHGALKTYMYYGDRRTRKAKELKQYDLVLTTYSTLAVELPYCTPVNMLKWRRIILDEAHTIKNINAAQSRAVIELKAKRRWAVTGTPIQNGSFDLYSLMAFLHFEPFSVKSYWQRLVQRPLNQGKDGGLTRLQVLMGAISLRRTKEMALVGLPPKTVETYYIALSCEERRRYDEVKEEVKALLIQYEEDRNTLVNGYSAILSMILRLRQICTDYALCPSNFKSHLLPSSDIEDVSKNPELLQALVRVLQDGDDFDCPICISPPTDIIITCCAHIFCRDCILKTLKRSNPRCPLCRRSLSESDLFSAPPETPEVDITKQSSSETRVSTKVSTLIKLLTESRDQHPTVKSVVFSQFRKLLVFLEEPLKEAGFKTLRLDGSMNAKHRARVIEQFQVSGKDEPMVLLASLKASSLGINLTAASRVYLMEPWWNPGVEEQAMDRVHRIGQKEDVKVVRFVALNSIEEKILMLQEKKKELAEEGCRRGSKDVLGMGINDLRFIMEE. 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03816 819 Coils Coil 491 511 - -
Seca2g03816 819 SUPERFAMILY RING/U-box 564 620 - -
Seca2g03816 819 SMART helicmild6 678 763 IPR001650 -
Seca2g03816 819 CDD SF2_C_SNF 641 774 - -
Seca2g03816 819 CDD RING-HC_HLTF 570 622 - -
Seca2g03816 819 Pfam SNF2-related domain 199 532 IPR000330 GO:0005524|GO:0140658
Seca2g03816 819 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 237 424 IPR014001 -
Seca2g03816 819 Pfam Helicase conserved C-terminal domain 647 763 IPR001650 -
Seca2g03816 819 Pfam HIRAN domain 25 118 IPR014905 GO:0003676|GO:0008270|GO:0016818
Seca2g03816 819 Pfam Zinc finger, C3HC4 type (RING finger) 572 618 - -
Seca2g03816 819 SMART HIRAN_2 23 119 IPR014905 GO:0003676|GO:0008270|GO:0016818
Seca2g03816 819 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 162 817 - -
Seca2g03816 819 SMART ultradead3 192 438 IPR014001 -
Seca2g03816 819 Coils Coil 776 796 - -
Seca2g03816 819 Gene3D - 14 135 - -
Seca2g03816 819 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 650 814 IPR001650 -
Seca2g03816 819 Gene3D - 472 809 IPR027417 -
Seca2g03816 819 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 552 639 IPR013083 -
Seca2g03816 819 Gene3D - 231 463 IPR038718 -
Seca2g03816 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 462 IPR027417 -
Seca2g03816 819 ProSitePatterns Zinc finger RING-type signature. 590 599 IPR017907 -
Seca2g03816 819 SMART ring_2 575 613 IPR001841 -
Seca2g03816 819 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 812 IPR027417 -
Seca2g03816 819 ProSiteProfiles Zinc finger RING-type profile. 575 614 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03816 Seca-Chr2 117503386 117509083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03816 8 817 RAD5 or RAD16-like Gene Family AT5G05130 57.651 0.0 952
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca2g03816 SNF2_N 3.6e-73 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03816 K15711 - fve:101311093 1005.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03816 2 117503386 117509083 Seca2g03816 2 117503386 117509083 ECH