Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03812 ATGACCATGAAGTCTGGGTCACTGGATGAGTGGAGGAATTACTTTAGGACTGCGAATTGTGATATATTCGATATAATTGACCATGCGATCATGGTGGCTGCTTCTGATTGCCCCAAGGAGTTCAGGTCAAGGAGGGATGGGATTGCTGAGAGGTTGTTCTCTTCAAGGTTGACTCGTTGTTTAGGGTGTGATAGGGTGGAGTTAGCTGTGTCTGGAGATGGTGGTAATGATGGTGGTGATAATGATGATGGAGGTTGCAAGAGTGGTTTTGATAGAGATGGGGCTGAGGTTGAAGCTGGGGTAAGCAAAGAGAGCAAGGTCAATTGTAGTAGAGATGATCATCATGGAGATATGGACATCAACCGGATTAGCAATTATAGTTTTGGAGAAGCTGAAGCTTTGACTGATGAGATTGAACAAGAGTCTCAGTTTGTTGGGGAAGTTTTGAGGATCAAAGACATTCTGCATAATCGTGAAGAAGAGTCTGACTCTGTGTTATTTGAGTCATTGAGGAGGCTTCAGCTGATGGAACTCAGTGTAGATTGTCTAAAGGCAACTGAGATTGGAAAGGCTGTCAATCCTCTCCGAAAGCATGGATCAAACGATGTTCGTCAACTCGCACGGACTCTTATCGATGGCTGGAAAGTAATGGTAGATGAGTGGGTCACGGCTACAACTAAAGCAGCTAATGCAGCTTCAGAAGGCACACCGGATTCAGTAAATCCATCTGTTGTCGATGATGAAGAAGAAATAGGACTTCCATCACCTCCTTTGGATGAAGGGGCTTTCTTTGTAGCTACAACTGGTTCAATAGAACTCTCACAATTCTTCGATGGCATGGATGATGATGGAAGTGAGTTGAATTTGCAATTTCTTGTGCTTTGTCTAGCTAGCTTTCGCTATCCTCGACAGAGTGGGCAATTCAACAAGAACCGTGACAATGGCAGAAAGCCAGCTTTGGACAATCAAGTTATAGAAAAAAGGAAATTTCAGGCTTCCAATGAGACAACCATCACTGCCAAGGACAATAAGAGTCAGCAACCAAAGAAAGTTGAGGCTGCAGTAAGGCTAAATAAGCCGGTAACCGCAGATTCTGGCCCTGGCAGACTACCAAAATCAAATATGCAGAGAAAAAGCAATGTGGAGCCAAAGATGCAGCAAAAAGTAGAGAACAATACAATCACAAAGAGGACTCCAATTAGTCAGCAAGATAAATCCAAGTTTTCAGATGATAAGCTGGAAGCCACTAAGAGGAAACTTCAAGAACGTTATCAACAAGCTGAAAATGCTAAGAGACAACGAACTATCCAGGTTATGGAGATTAATGATCTTCCTAAACAAGGGATTGTACACCGGAATCCGCATTTTAAACCTGGACATAATAGGCAATGGGGAAGGAGATAG 1404 0.4316 MTMKSGSLDEWRNYFRTANCDIFDIIDHAIMVAASDCPKEFRSRRDGIAERLFSSRLTRCLGCDRVELAVSGDGGNDGGDNDDGGCKSGFDRDGAEVEAGVSKESKVNCSRDDHHGDMDINRISNYSFGEAEALTDEIEQESQFVGEVLRIKDILHNREEESDSVLFESLRRLQLMELSVDCLKATEIGKAVNPLRKHGSNDVRQLARTLIDGWKVMVDEWVTATTKAANAASEGTPDSVNPSVVDDEEEIGLPSPPLDEGAFFVATTGSIELSQFFDGMDDDGSELNLQFLVLCLASFRYPRQSGQFNKNRDNGRKPALDNQVIEKRKFQASNETTITAKDNKSQQPKKVEAAVRLNKPVTADSGPGRLPKSNMQRKSNVEPKMQQKVENNTITKRTPISQQDKSKFSDDKLEATKRKLQERYQQAENAKRQRTIQVMEINDLPKQGIVHRNPHFKPGHNRQWGRR. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03812 467 ProSiteProfiles TFIIS N-terminal domain profile. 146 221 IPR017923 -
Seca2g03812 467 MobiDBLite consensus disorder prediction 229 252 - -
Seca2g03812 467 Coils Coil 410 437 - -
Seca2g03812 467 MobiDBLite consensus disorder prediction 358 410 - -
Seca2g03812 467 MobiDBLite consensus disorder prediction 372 402 - -
Seca2g03812 467 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 144 230 IPR035441 -
Seca2g03812 467 CDD TFIIS_I 147 219 - -
Seca2g03812 467 SMART TFS2_5 145 220 IPR003617 GO:0005634
Seca2g03812 467 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 458 IPR044805 -
Seca2g03812 467 Pfam TFIIS helical bundle-like domain 170 218 IPR017923 -
Seca2g03812 467 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 137 235 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03812 Seca-Chr2 117334761 117339157 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Seca2g03812 Med26 4.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03812 - - gmx:100799367 621.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03812 2 117334761 117339157 Seca2g03812 2 117334761 117339157 ECH