Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03795 ATGCCTTCGAATTCAAAGCAGAAGAAGAAGGCGCAGTCAAGGCTATCATCATCATCCTCTGCTCCCGAATCGACTGCATCTTCTGAAACCTATCAACCACAACAACTTGCCTCTCTCTGCCAAGAAGCTTCTCAGAAGTTCCCTTCTTTTATCTCTGAATCCGCGTTTGTGGGAGAAATCACTGACGTTGTCACTGCCCCTATTTCCAAAGGCTCTAAAATTTGGCTCTCCGAACCTTCCATGCTTTCCTCTTCTCTTGCCCCCGGTTCCATTGTTTCTGTGTCTATTCCATCCTCAAATAAAGAAAGCAAACAGTTGCATAGCTTTCCTCTCACATCATTAGCTAATGAGTGTGTCAAATGCTACGGATTGGAAACCTGTAAGACATTGAATGACGATGCAGGAAACTATTTTGCTATTACAACAGTATTTCCCTCTAGTAAGGTTTTGAAGAATGGAGTGCACCTGTCTTCAAATCTTTCTTATACCATGGGATGTCCTCCTTTGGGCACAAGTGTGTTTGTTCACCCGTTACAGAAACAGTACTTATCTTATCTTGCAAATGGGAACAATGGATTGCATTCGACAGAAAATAATTGTTTGTTATACAATTGCAAGGAATTGTATCTTCAGTTGGCTCCTTGTAAGAATAGACTACCACTGAAAGTTAATAATTTTCCCTCATTGAACTTGCCTAAAGCAAAATCTCATGTTCAATGCGAGAATGACATTGTTTCATCTCCAAAAACACCTTATCAATCAAAGGTTTCTAACGGTAGTGGGTTGTCTTCCCCAGATTCAGAATCAAGTGTAACTAATAATAGTAGTCAATCAATGGTATCATTTGATGTTAGCGAGACATTAGGGAATGAAAGTTCCAAAAAACTACTACAGACGTGTGCAGCTTCATGGTTAGATTCTCGTTGTTTACTGCTAGGGAATCTTGTCAATGTCCCAATGTTTTCAGAGTTGTGCATCTTCCAAGTGATAGGAGCTAAAAAGGTCCCGGTTACCATACCTTATCATAATCCATTGAATGGGAGCAGTAATATAAATCCTGAGGACTCTGATACAGAGGAGAATGTAAATCTGGCTTTCACTGTTAATTTGGAGACAAAGGTATTTTTATCTCTACCATCAAATGCGGCATCAGAGGAGCCAATTCAAAAGGATTTATCATGTGTGAAACTTAATCACAAGGTTGCTAATGCTAGCATATGTGATACTATTTCTAAATTGGGTGGTCTATCTAAAGAATATACTCTTTTGAAGGATATAATTTCTTCGTCAGTAAAAGATGCTTTATCAAGGTATGTCTTGTTTGTTGCGTATTTTCCTCTTTGTAGTTTTGGTTTACGAACTACAAGAGGAGTCCTTCTTCATGGTCCACCTGGTACAGGAAAGACTTCCTTGGCTCAGTTATGTGCTCATGATGTTGGGGTCAATTTTTTCCCAATAAATGGACCTGAAATTGTTACCCAGTATTATGGGGAAAGTGAGCAAGAATTGCACAAAGTTTTTGATTCAGCCATTCAAGCTGCACCTGCTGTGGTATTCATTGATGAATTAGATGCAATTGCCCCTGCAAGGAAAGATGGAGGTGAAGAGCTATCTCAAAGATTGGTTGCAACCTTATTGAATCTGATGGATGGAATTAGTAGAACTGAAGGATTACTTGTAATTGCTGCCACTAATAGGCCTGACCATATTGAGCCAGCTCTCAGACGACCTGGAAGATTTGACAAGGAAATTGAAATCGGTGTGCCATCCGCTGAACAACGAGGGGATATTTTGCGCACTCTTCTCAGTGAAAAAGATCACTCTCTCTCTGTTTCACAAATTGAACACCTTGCCACAGTCACTCATGGTTTTGTGGGCGCTGATCTAGCTGCCCTTTGCAATGAGGCAGCCTTCATTTGTCTACGAGGTTATGTTAAGAAGAATTATGGTGCTTATTCAGATACTATAACAAAGCAACCCACTCTGATGAATTGTGAAACAAACTCAAGAGATCATTCCAGTGTAGTAACTCCATCTGTTTCAGATGTGTCAGTGGCCTCCAGTCTGATGGGAACAACTTCTGAAATTATGGAAAGAATACCCGAAAGAGATTTGAAAGTGAGTTTTGAAGATTTTCAGAAGGCTAGGATGAAAATAAGGCCCAGTGCCATGAGAGAGGTAATCCTTGAGATTCCAAAGGTTAATTGGGATGATGTCGGTGGCCAAGAGGAGGTCAAAGCTCAATTGCTGGAAGCAGTAGAATGGCCCCAGAAACACCATGATGCATTCACCCGGATTGGGACTCGCCCTCCAACAGGTATTTTGATGTTTGGGCCTCCAGGTTGTAGCAAAACCCTCTTGGCACGTGCAGTTGCTCGGAGAGCAGGACTGAACTTTCTAGCAGTCAAGGGTCCGGAACTCTTCAGCAAATGGGTTGGTGAATCTGAGAAGGCTGTCAGATCATTGTTTGCAAAAGCAAGGGCCAATGCCCCATCCATTGTATTTTTTGATGAAATAGATGGTCTCGCTGTAACTCGTGGCAAGGAAAGTGATGGTGTTTCAGTGTCAGATAGGGTCATGAGTCAACTTCTTGTTGAATTGGATGGTCTGCATCAAAGAGTTAATGTTACTGTCATAGCTGCTACAAATAGGCCAGACAAGATTGATCCTGCCCTTTTAAGACCAGGACGCTTTGACCGTCTGCTATATGTTGGGCCTCCAAATGAGATGGATAGAGAAAAGATATTTCGCATTCATTTGCCTCCACATGATTCTGATGTTAACCTTAAAGAACTGGCTCAACTCACAGATGGTTGTACTGGGGCTGACATATCACTAATATGTCGGGAAGCAGCTTTTGCAGCACTTGAGGAGAACCTTGATGCTAAAGTCATAACAATGAAGCACTTAAAGATGGCAATCGAACAGGTTCAGCCAACAGAAGTTCAGTCTTACCAAAAGCTGTCAGAAAAATTTCAAAGGGTCGTTCACTGCAGTGATATAGAAAGATGA 3012 0.414 MPSNSKQKKKAQSRLSSSSSAPESTASSETYQPQQLASLCQEASQKFPSFISESAFVGEITDVVTAPISKGSKIWLSEPSMLSSSLAPGSIVSVSIPSSNKESKQLHSFPLTSLANECVKCYGLETCKTLNDDAGNYFAITTVFPSSKVLKNGVHLSSNLSYTMGCPPLGTSVFVHPLQKQYLSYLANGNNGLHSTENNCLLYNCKELYLQLAPCKNRLPLKVNNFPSLNLPKAKSHVQCENDIVSSPKTPYQSKVSNGSGLSSPDSESSVTNNSSQSMVSFDVSETLGNESSKKLLQTCAASWLDSRCLLLGNLVNVPMFSELCIFQVIGAKKVPVTIPYHNPLNGSSNINPEDSDTEENVNLAFTVNLETKVFLSLPSNAASEEPIQKDLSCVKLNHKVANASICDTISKLGGLSKEYTLLKDIISSSVKDALSRYVLFVAYFPLCSFGLRTTRGVLLHGPPGTGKTSLAQLCAHDVGVNFFPINGPEIVTQYYGESEQELHKVFDSAIQAAPAVVFIDELDAIAPARKDGGEELSQRLVATLLNLMDGISRTEGLLVIAATNRPDHIEPALRRPGRFDKEIEIGVPSAEQRGDILRTLLSEKDHSLSVSQIEHLATVTHGFVGADLAALCNEAAFICLRGYVKKNYGAYSDTITKQPTLMNCETNSRDHSSVVTPSVSDVSVASSLMGTTSEIMERIPERDLKVSFEDFQKARMKIRPSAMREVILEIPKVNWDDVGGQEEVKAQLLEAVEWPQKHHDAFTRIGTRPPTGILMFGPPGCSKTLLARAVARRAGLNFLAVKGPELFSKWVGESEKAVRSLFAKARANAPSIVFFDEIDGLAVTRGKESDGVSVSDRVMSQLLVELDGLHQRVNVTVIAATNRPDKIDPALLRPGRFDRLLYVGPPNEMDREKIFRIHLPPHDSDVNLKELAQLTDGCTGADISLICREAAFAALEENLDAKVITMKHLKMAIEQVQPTEVQSYQKLSEKFQRVVHCSDIER. 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03795 1003 Gene3D - 589 733 - -
Seca2g03795 1003 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 732 988 IPR027417 -
Seca2g03795 1003 Gene3D - 907 990 - -
Seca2g03795 1003 PANTHER AAA-FAMILY ATPASE 73 993 - -
Seca2g03795 1003 FunFam calmodulin-interacting protein 111 isoform X1 731 906 - -
Seca2g03795 1003 ProSitePatterns AAA-protein family signature. 876 894 IPR003960 GO:0005524|GO:0016887
Seca2g03795 1003 Pfam ATPase family associated with various cellular activities (AAA) 458 587 IPR003959 GO:0005524|GO:0016887
Seca2g03795 1003 Pfam ATPase family associated with various cellular activities (AAA) 774 905 IPR003959 GO:0005524|GO:0016887
Seca2g03795 1003 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 429 643 IPR027417 -
Seca2g03795 1003 Pfam AAA+ lid domain 926 971 IPR041569 -
Seca2g03795 1003 Pfam AAA+ lid domain 614 644 IPR041569 -
Seca2g03795 1003 MobiDBLite consensus disorder prediction 1 33 - -
Seca2g03795 1003 Gene3D - 734 999 IPR027417 -
Seca2g03795 1003 FunFam Calmodulin-interacting protein 111 589 734 - -
Seca2g03795 1003 MobiDBLite consensus disorder prediction 245 277 - -
Seca2g03795 1003 SMART AAA_5 454 590 IPR003593 GO:0016887
Seca2g03795 1003 SMART AAA_5 770 908 IPR003593 GO:0016887
Seca2g03795 1003 Gene3D - 395 587 IPR027417 -
Seca2g03795 1003 CDD RecA-like_CDC48_r2-like 745 904 - -
Seca2g03795 1003 FunFam Putative vesicular transport protein (CDC48) 397 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03795 Seca-Chr2 117138813 117151343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03795 1 997 Calmodulin-binding Proteins AT3G56690 55.374 0.0 1008
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03795 - - gmx:100788600 1420.6