Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03793 ATGAGGGAGGACGATTCAAATTGGTTTTCAAGATGGGAAGAGGAACTCCCTTCCCCAGAGGAACTCATGCCCTTATCTCAAACCCTAATCACCCCTGATCTAGCCATGGCCTTTGACATCAGAAACCCACACACAACCACCATCACCACCACCACACCACAACAACAACAGCAACAACAACAACAGCAGCAACAACAACAACAACCCCTTCCACCTTCCAACCCTTCATCCCTCCCTTCCTCTGCTGATTTCGCCGATTCCGGCGAACTGGGGTCCGGCACCGCCGGCGAGGAACCGGCCCGCACACTCAAAAGGCCACGCCTTGTGTGGACCCCACAACTCCACAAGCGCTTCGTTGACGCCGTGGCACACCTTGGAATCAAAAACGCGGTTCCAAAGACCATAATGCAGCTCATGAGCGTCGATGGTTTGACCAGAGAAAACGTCGCTAGCCACCTGCAAAAATACCGCCTTTATCTGAAACGCATGCAGGGCATTTCCGCCGCTGGACCCGCCGGCGCCGGCGGCGGAGCTGGCCCTGCTGTTGCCGCTGACCCCGCCACCGACCACCTCTTCGCCAGCTCCCCTGTACCGCCGCACTTCTTGCATCCTGCGGCCGCTGCGCGGCCTAATTCCGATAACTTCTTGCCGTTTGTGCCTGTCCCCACCGCCCTCCACCACCATCAGCAGCAGCTGGCGGCGGCACAGTATCACCGGCCAGTGGGGCATTTTGGGTCGCCGCCAAATGGCCACTTTGAGAATCCCTTCCTGTCTAGGCAGCAGCATCAGCAACAGCAGCTTCATAGAATGGGGGCACCAGTGCACAACCCTGTACCTGGTTATGTGGAGGACATGGAATCAGCTAATGCAGCAGGAGGGAGAAAGGTTCTTACTTTGTTTCCCACTGGAGATGATTGA 918 0.5686 MREDDSNWFSRWEEELPSPEELMPLSQTLITPDLAMAFDIRNPHTTTITTTTPQQQQQQQQQQQQQQQPLPPSNPSSLPSSADFADSGELGSGTAGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGISAAGPAGAGGGAGPAVAADPATDHLFASSPVPPHFLHPAAAARPNSDNFLPFVPVPTALHHHQQQLAAAQYHRPVGHFGSPPNGHFENPFLSRQQHQQQQLHRMGAPVHNPVPGYVEDMESANAAGGRKVLTLFPTGDD. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03793 305 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 271 IPR044841 GO:0003700|GO:0006355
Seca2g03793 305 FunFam Two-component response regulator 101 164 - -
Seca2g03793 305 Pfam Myb-like DNA-binding domain 109 157 IPR001005 -
Seca2g03793 305 Gene3D - 102 164 - -
Seca2g03793 305 MobiDBLite consensus disorder prediction 1 18 - -
Seca2g03793 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 110 161 IPR017930 -
Seca2g03793 305 MobiDBLite consensus disorder prediction 1 25 - -
Seca2g03793 305 SUPERFAMILY Homeodomain-like 102 162 IPR009057 -
Seca2g03793 305 MobiDBLite consensus disorder prediction 39 104 - -
Seca2g03793 305 MobiDBLite consensus disorder prediction 42 83 - -
Seca2g03793 305 NCBIfam myb-like DNA-binding domain, SHAQKYF class 106 158 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03793 Seca-Chr2 117118567 117119484 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03793 1 305 G2-like Transcription Factor Family AT3G10760 56.857 1.58e-102 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca2g03793 Myb_DNA-binding 2.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03793 - - ccaj:109802866 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03793 2 117118567 117119484 Seca2g03793 2 117118567 117119484 ECH