Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03775 ATGGAATTCTCTCAGCTAAGCCATTCTTTGGAAAATGAACTGAAAATTGAAGACTCAGGAGAATTCCCTTTCATTGAAATTGGAAATGAAGGTCTCACAAAACGGATTCTCAGAAAAGGAGTCACTTGGCAAACTCCATTCTCTGGAGACGAAGTGGAAGTTCATTTTAGAGGACATATTGAAAACGGAGCATCTCTTGAATCCAGTTATGATAAAGGGTCAACATTTCGTTTCAAATTAGGCCAATGTGAGGTTATCAAAGGTTGGGATGAAGGAGTTGCCACCATGAAGAAAGGGGAGAGAGCAATCTTCAAAATACCACCAAACTTAGCATATGGGGCAGTAGGTTCTCCACCATTGATTCCTCCCAATGCAACTCTCATTTTTGACATTGAAATGCTATCTTGGAGTACCATCAGGGACTTAACTGGTGATGGAGGAATCATGAAAAAGATAATACAAGAGGGAGAAGGATGGGCTACTCCTAGAGAGGCTGATGAGGTCCTAGTGAAATATGAAGCAAGGCTAGAGAATGGGATGCTTGTTAAGTCTGATAAAGGTGTGGAGTTTAATGTAAGTGAGGGCTATCTTTGTCCTGCAATGAGTATAGCAGTAAAGACAATGAGAAAGGGTGAGGTGGCAGAGCTAGCTATGAAATTATGTTATGGGCTCAGTCAGAATTCAAATAGAACCACTGAGTTTGATGGTTTACCAGATTCTAATTTAACTACAATCAAACTTGAGCTGGTGTCGTGGAATGTTGTTACTGATGTCTTGGGAGATAAGAAGATACTGAAAAAAATTAAGAAAGCTGGTGAGGGATTTGATCGTCCAAATGAAGGATCCCAAGTGAAAGTGATATATTTGTGTAAAAGAGAAGATGGTGCAATTATTGAGAGAAAAGGGTCAGAGGAAGAACCTTTTGAATTCACAACTCAGGAAGAACAGGTACCTGAGGGTTTAGAAAGAGCAATAATGACAATGAAAAAAGCAGAACAAGCTCTGGTGACTATCAATACTGAATATTTGTGTGACCAAAATAATTTACAAGGAAACACGGCCAATGATAAAGTCCTTTATTATGAAGTTGAAATGGTTGATTTCATTAAGGAATTTGGAAAATTGGAAAATGGAGACTACAGGCAATAA 1149 0.3873 MEFSQLSHSLENELKIEDSGEFPFIEIGNEGLTKRILRKGVTWQTPFSGDEVEVHFRGHIENGASLESSYDKGSTFRFKLGQCEVIKGWDEGVATMKKGERAIFKIPPNLAYGAVGSPPLIPPNATLIFDIEMLSWSTIRDLTGDGGIMKKIIQEGEGWATPREADEVLVKYEARLENGMLVKSDKGVEFNVSEGYLCPAMSIAVKTMRKGEVAELAMKLCYGLSQNSNRTTEFDGLPDSNLTTIKLELVSWNVVTDVLGDKKILKKIKKAGEGFDRPNEGSQVKVIYLCKREDGAIIERKGSEEEPFEFTTQEEQVPEGLERAIMTMKKAEQALVTINTEYLCDQNNLQGNTANDKVLYYEVEMVDFIKEFGKLENGDYRQ. 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03775 382 SUPERFAMILY FKBP-like 27 137 - -
Seca2g03775 382 Gene3D - 25 139 IPR046357 GO:0003755
Seca2g03775 382 FunFam Peptidylprolyl isomerase 3 138 - -
Seca2g03775 382 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 165 253 IPR001179 GO:0003755
Seca2g03775 382 SUPERFAMILY FKBP-like 142 223 - -
Seca2g03775 382 Gene3D - 140 253 IPR046357 GO:0003755
Seca2g03775 382 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 263 370 - -
Seca2g03775 382 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 161 226 IPR001179 GO:0003755
Seca2g03775 382 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 46 134 IPR001179 GO:0003755
Seca2g03775 382 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 277 365 IPR001179 GO:0003755
Seca2g03775 382 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 49 137 IPR001179 GO:0003755
Seca2g03775 382 SUPERFAMILY FKBP-like 258 369 - -
Seca2g03775 382 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 281 369 IPR001179 GO:0003755
Seca2g03775 382 Gene3D - 254 371 IPR046357 GO:0003755
Seca2g03775 382 Coils Coil 321 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03775 Seca-Chr2 116506789 116512090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03775 25 371 Calmodulin-binding Proteins AT5G48570 52.101 3.68e-121 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03775 - - gmx:100785412 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g03775 2 116506789 116512090 Seca2g03775 2 116506789 116512090 ECH