Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03772 ATGGGTGAAGAGGAAGAGCCTAAACAAAACCAGGACAAGCAGAAGGTGATCATATTGGGAGAATCTAATGCAAGTGAGGATTCAAAGAATTCCAAAATAGATTCTAAAGAGGGTGGAGAAGACTCAACAAATTATCCCAAAGAAAGCTCTCCATTGCTTCTTTTTGGATTCATTATTGATCCTACTAAAGGAAATCAAAAGGCTGCTTACTCTTGTGGTTTTTGTAACAAAAGCTTTGTTACTCCACAAGCATTAGGTGGCCACCAAAATGGCCACAAATGGGAGAGAAATCTCAAACAAGGAATCCAGGCTATAAATATAGCCAGGGGAAGGAGCTCATGCTATGATTTTTCATCACCAACCCTGCCTAGCTATGAACCTTTTAGTGGAGGCTGTGGCTATCAATCTTATGGACTAGACAAAATGATTCAACATACAGGGGTTGCAAACACTAGTTTTGGCACAGGGTATGGTATGCTAGACATTGGAAATAGTAGTGCATTTCAGCATCCTGAGATGGTACGATTCAATCATGGGTTTGAGACTAGCAATTATGATAGAATGGAAAATGTTTATTATGGGATGCATTCACAGACTGATCATGAAGTCAAAGAGACTGGAAAAACAGGATTTGACTTTGTTTTGCTACCAATGGGAAATGATCAGATCATAGGGAATCAACGGGTTACGAGCTCAGAGATTGACTTTGGTTTGCTTCCAAAGAGAGATGGTGAAGACACAGAGATTCAGCATGATTAA 759 0.3979 MGEEEEPKQNQDKQKVIILGESNASEDSKNSKIDSKEGGEDSTNYPKESSPLLLFGFIIDPTKGNQKAAYSCGFCNKSFVTPQALGGHQNGHKWERNLKQGIQAINIARGRSSCYDFSSPTLPSYEPFSGGCGYQSYGLDKMIQHTGVANTSFGTGYGMLDIGNSSAFQHPEMVRFNHGFETSNYDRMENVYYGMHSQTDHEVKETGKTGFDFVLLPMGNDQIIGNQRVTSSEIDFGLLPKRDGEDTEIQHD. 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03772 252 SUPERFAMILY beta-beta-alpha zinc fingers 67 98 IPR036236 -
Seca2g03772 252 MobiDBLite consensus disorder prediction 1 47 - -
Seca2g03772 252 MobiDBLite consensus disorder prediction 27 43 - -
Seca2g03772 252 Gene3D Classic Zinc Finger 49 112 - -
Seca2g03772 252 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 198 IPR044246 GO:0009788
Seca2g03772 252 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Seca2g03772 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 97 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03772 Seca-Chr2 116445611 116446435 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03772 40 115 C2H2 Transcription Factor Family AT5G01860 42.500 1.72e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca2g03772 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03772 - - mtr:120577076 127.487