Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03718 ATGGGGAGGAAGCGAAAGGTCGCACCTAAAACTTCTCAATCACCCGAACCCCCACTCAAGCAGCACCATCCATCTCATCTTCAATCGGAGCTAGAACAAGACAATGCAGCCGAAGAATACGAGGAAGTCGAAGAAGAAGTAGAGGAAGAAGTAGAAGAAGAAGAAGAGGAGGAGGAGGATGAAGAAGAAGAAGAAGATCAAGAAAATAATGACGAAGGGGAACAAGAGCAAGACGACGACCCGATCCAGAAGATTCTGGAACCCTTCAGCAAGGAACAGATCTTGAACCTCCTCATCGATGCGGCGACAAAGCACCGTGACGTGGCGAACCGGATCCGCAAGGTGGCTGATGAGGATGCCGTCCACCGGAAAATCTTTGTCCATGGCCTTGGATGGGACACCACAGCCCAAACCCTAATCAACGCGTTCCAGCAATACGGTGAGATCGAGGACTGTAAGGCGGTGACGGACAAGGTCTCCGGCAAGTCCAAGGGCTACGGTTTCATCCTCTTTAAGACACGCCGTGGCGCACGCAACGCCCTCAAGCAGCCGCAGAAGAAGATCGGAAACCGCATGACGGCATGCCAGCTGGCATCCATAGGACCGGCACAGCAGCAGCAGCAGCTGCCACAACCAACTCTGCAGCATTCGCCACAGGTTTCTGAGTACACTCAGAGGAAGATCTATGTTAGCAACGTCGGTGCTGAACTCGATCCGCAGAAGCTTCTTGCCTTCTTCTCGCGGTTTGGGGAGATTGAGGAAGGGCCGTTAGGGCTCGACAAGCTAACTGGAAAACCGAAAGGGTTCTGCTTGTTTGTTTATAGAACTGCTGAGAGTGCAAGAAGGGCTTTGGAGGAACCTCACAAGGAGTTTGAGGGGCATATTTTGCATTGCCAGAAGGCAATTGATGGTCCAAAGATGGGTAAGACGCAGTATCAGCAGCAGCCAGGGAATCCTTTGGGACAGAGGACCCAATTTCAGAGAAATGACAGCACCAGCTTTGTTGGTGCTGGCTCAACTGCTGCTGCTGCTGCTGCTCAACCGGGACACTTGATGGCCCCGTCTGGACCCGGAATAGGGTACAATCAGGCTGCACAGGCACTGAACCCGGCTCTTGGGCAAGCATTGACAGCACTGCTTGCCTCTCAGGGTGCTACGTTGGGGCTTAGTAATTTGTTGGGGAGCCTTGGAACTAGTGGTGCGGTTAACCCTGGTGTACCAGCTGCTGCAGGTCATGGAGTCCAGAGTGGATACAGTGCCCAGCAAAATATAAGCCCGGGTGTTATTGGAGCATATGGGAATCAGGTTGGATTGCAGGCGGCGTATCCAAACCAGCAGGTTGGTCAAGGTGGCTCTGGAAGAGGGCAATATGGTGGCGCTGCACCATACATGGGGCACTAG 1401 0.5318 MGRKRKVAPKTSQSPEPPLKQHHPSHLQSELEQDNAAEEYEEVEEEVEEEVEEEEEEEEDEEEEEDQENNDEGEQEQDDDPIQKILEPFSKEQILNLLIDAATKHRDVANRIRKVADEDAVHRKIFVHGLGWDTTAQTLINAFQQYGEIEDCKAVTDKVSGKSKGYGFILFKTRRGARNALKQPQKKIGNRMTACQLASIGPAQQQQQLPQPTLQHSPQVSEYTQRKIYVSNVGAELDPQKLLAFFSRFGEIEEGPLGLDKLTGKPKGFCLFVYRTAESARRALEEPHKEFEGHILHCQKAIDGPKMGKTQYQQQPGNPLGQRTQFQRNDSTSFVGAGSTAAAAAAQPGHLMAPSGPGIGYNQAAQALNPALGQALTALLASQGATLGLSNLLGSLGTSGAVNPGVPAAAGHGVQSGYSAQQNISPGVIGAYGNQVGLQAAYPNQQVGQGGSGRGQYGGAAPYMGH. 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03718 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 205 IPR000504 GO:0003723
Seca2g03718 466 SUPERFAMILY RNA-binding domain, RBD 115 209 IPR035979 GO:0003676
Seca2g03718 466 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 39 309 - -
Seca2g03718 466 Coils Coil 26 76 - -
Seca2g03718 466 MobiDBLite consensus disorder prediction 447 466 - -
Seca2g03718 466 MobiDBLite consensus disorder prediction 34 78 - -
Seca2g03718 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 228 296 IPR000504 GO:0003723
Seca2g03718 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 191 IPR000504 GO:0003723
Seca2g03718 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 226 307 IPR000504 GO:0003723
Seca2g03718 466 SMART rrm1_1 124 196 IPR000504 GO:0003723
Seca2g03718 466 SMART rrm1_1 227 299 IPR000504 GO:0003723
Seca2g03718 466 SUPERFAMILY RNA-binding domain, RBD 215 326 IPR035979 GO:0003676
Seca2g03718 466 Gene3D - 206 319 IPR012677 -
Seca2g03718 466 MobiDBLite consensus disorder prediction 1 80 - -
Seca2g03718 466 Gene3D - 28 205 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03718 Seca-Chr2 115012268 115013668 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03718 225 318 C2H2 Transcription Factor Family AT2G19380 36.842 4.03e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03718 K12741 - gmx:100784200 565.844