Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03661 ATGGGGAGGCCTCCTTGCTGTGACAAAGTTGGCATCAAGAAGGGTCCATGGACACCTGAAGAAGATATCATCCTTGTCTCTTACATCCAAGAACATGGTCCAGGAAATTGGAGATCAGTGCCTACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACAAATTACCTGAGGCCAGGAATCAAGAGAGGGAACTTCACTCCTCATGAGGAAGGGATGATAATTCATTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTTCCTACCTTCCACAAAGAACAGATAATGACATAAAGAATTATTGGAACACACATCTAAAGAAGAAGCTGAAGAAATTTCAAGCAGCCTTAGAGCCCCACCAAGCATCAGATTCAACAACAACAACCAATACTAGTTCTGGTCAGTATCTATCAAAGAGCTTTAGTGACAGAAGTTTAGATATCAGCTGTAGCAACAACCATGCCTCATCTCTTGGACTTAATCATTCTTCTCAGTCCTCAACATATGCTTCAAGCACTGAGAATATCTCAAGGCTTTTAGAAGGTTGGATGAGATCTTCTCCAAAGCCACTCAAAGGAACCACTCACCAAGATGAAGAAGAAGAAGATGAAGAAGAAGAAAATAATGGGAATAAGTTAGTGAAATCTGCATCAGTTCCTGCTGCTTTAAACCTTCAGATTCAGCACAAAATAATGACCAAAGATGAGGGTGGTGGAGGAGATTTAGTGTCTCATGAAGAGTTTGATTCTATTCTGTCATTTGAGAACCTTAACAATGCTGCTTGGGACAAGTCAACTTGTGATTCAATGCCTGAAAAGTGTTCTGAAGCTGTGGACAAGAACAATATTAGGCAGAAATCTGAGAATAGTAGTGCTCCTCCATTGTCATTTCTTGAGAAGTGGTTGTTGGATGAAAATGTTGGTCAAGTGGAGGAGATGATGGAATTAGCTCCTATGTTCTAA 981 0.4118 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQALLGNKWAAIASYLPQRTDNDIKNYWNTHLKKKLKKFQAALEPHQASDSTTTTNTSSGQYLSKSFSDRSLDISCSNNHASSLGLNHSSQSSTYASSTENISRLLEGWMRSSPKPLKGTTHQDEEEEDEEEENNGNKLVKSASVPAALNLQIQHKIMTKDEGGGGDLVSHEEFDSILSFENLNNAAWDKSTCDSMPEKCSEAVDKNNIRQKSENSSAPPLSFLEKWLLDENVGQVEEMMELAPMF. 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03661 326 FunFam MYB-related transcription factor 13 66 - -
Seca2g03661 326 CDD SANT 69 112 IPR001005 -
Seca2g03661 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Seca2g03661 326 FunFam Transcription factor MYB60 68 139 - -
Seca2g03661 326 CDD SANT 16 61 IPR001005 -
Seca2g03661 326 Gene3D - 69 141 - -
Seca2g03661 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca2g03661 326 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 215 - -
Seca2g03661 326 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca2g03661 326 Gene3D - 13 66 - -
Seca2g03661 326 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca2g03661 326 SMART sant 66 114 IPR001005 -
Seca2g03661 326 SMART sant 13 63 IPR001005 -
Seca2g03661 326 MobiDBLite consensus disorder prediction 125 142 - -
Seca2g03661 326 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca2g03661 326 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca2g03661 326 MobiDBLite consensus disorder prediction 123 142 - -
Seca2g03661 326 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca2g03661 326 MobiDBLite consensus disorder prediction 189 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03661 Seca-Chr2 113399671 113401360 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03661 1 139 MYB Transcription Factor Family AT5G62470 81.295 8.26e-83 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g03661 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03661 K09422 - gmx:100817854 483.411