LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g03657	ATGAGGACAGAATCTAATAGGAAGAGTGATGGTGTCGAACCCGAAAAATCTAATTCACCTCCTAAACATAATGTTGATTCTGATGAGATTGCTGATGGTTATAAAAAGATATCTAAACTTACAGATGAGGATATCAGAGCTCTTGAGTTTGATTCTGAAGAAGATGGATATGTTTTCTACCGTGAGTATGCAAAATTCATAGGGTTTGCTGTTAGGAAACATGATGTGTATAGAGATCGTAATGATGTAATGACAATGAGACAATTTGTATGTAACAAGGAGGGAGAGAGAAGTGGGAAGCACCTTAATAAGACTGATAGAAAGAGGGAGGCAAAGGCCATTACACGAACAAAATGTAATGCAAGGCTCCGAATTCATTTAGATTATAAGAGTAGAAAGTGGAGTTTTGGTTGTTTTGAGCCAGCCCACAACCATGAATTGACTCCTGCTAGTATGGTTCATTTGATGCCGGCTTATCGTGGGTTGAGTGTAGCTGATAAGGCACAGGTTGACGGTCTACATCATTACGGTGTTAGGACTTGCCATATTATGGGGCTTATAATGGTCCAGAAGGGGGGTTATTCTGATCTTGGATTCTGTAAGAAGGATTTGTACAATCACATTGATAAGGTGAAGAGGGCAAAAATTGAGGATGGTGATGCTTTTGCAGCTTTGTGTTACCTTCAGGCAGAGTTTGATAACAATCCACTTACCTTTGTAAAGTTTAAAACAACTGAAGATGATAGACTTGAAAACTTGTTTTGGGCTTATATAGGTAGCAAAATTGATTATATTTGTTTCGGGGATGTAGTTGCTTTTGACACAACATACAAGAAAAATAAGTATAACAGACCCTTAGTCATTTTTTTTGGTTATAACCATCATGGTGAAACCACTATTTTTGGTTGTGCTCTTGTTGCGGATGAGAAGACTGAAACATATAAATGGGTCCTTGAAACATTCTTGAAGCCATGTGCAATAAACTTCCTAAGGCCGTAG	999	0.3804	MRTESNRKSDGVEPEKSNSPPKHNVDSDEIADGYKKISKLTDEDIRALEFDSEEDGYVFYREYAKFIGFAVRKHDVYRDRNDVMTMRQFVCNKEGERSGKHLNKTDRKREAKAITRTKCNARLRIHLDYKSRKWSFGCFEPAHNHELTPASMVHLMPAYRGLSVADKAQVDGLHHYGVRTCHIMGLIMVQKGGYSDLGFCKKDLYNHIDKVKRAKIEDGDAFAALCYLQAEFDNNPLTFVKFKTTEDDRLENLFWAYIGSKIDYICFGDVVAFDTTYKKNKYNRPLVIFFGYNHHGETTIFGCALVADEKTETYKWVLETFLKPCAINFLRP.	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g03657	332	Pfam	MULE transposase domain	270	321	IPR018289	-
	Seca2g03657	332	MobiDBLite	consensus disorder prediction	1	30	-	-
	Seca2g03657	332	Pfam	FAR1 DNA-binding domain	59	148	IPR004330	-
	Seca2g03657	332	PANTHER	OS01G0519700 PROTEIN	45	323	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g03657	Seca-Chr2	113341245	113342243	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Seca2g03657		FAR1	1.2e-19	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g03657	-		-	ccaj:109792835	373.629