Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03654 ATGGAAACAACTAAAAACACCCTCCCTCCTCCTCCTCCTCCTCCTCCTCCTCAAACTCTTCCTCCTCCTCCTCCTCCTCCTCCTCAAACTAAAGTAAACAGAGTCCTAAGAAAAAGGAAGGTGTCACTAAAACTGATTGAGAATTTGAAAGTAAGAAAACGTTGTTACAAAAGAAGAACTGTGGGGTTGTTAAGGAAGATAGAGGAGCTTTCCATACTTTGTGGTATCCCTACATGCTTAGTCATCTCTGGTCCAGGTGATACTAAGCCTAAAATATGGCCATCCCCTGAAGTGGCTAAACAACTACTACAGAGGCTTGAGGAAGTTCCAAAGGGTGTTAAGTCAAGAAAAGTGGTTACCCAATTGTCTTTTATGCGTGATAAGACAAAAAAGTTAGAAAATCAACTTGCCAGGCTTAAGGAGAGAAACAATGAGAAATATATGTCAATTTTAATGCATCAAATCCATCATGATGGTAAGTCTTTATCTGATTTTGAGCCTAATGATTTGAAGTGTTTACTTGGTTATGTGGAGCAAAAACTGAAAAAAGTTAGAATGAGAACCAAGCATTTTAAGCAGGTGTTGCCTCTTAATCCTCCTCCTCCACCACCACCACTGTCTTGTCCTCAAGAGAATGAGGTCCTAGAGAAACAATCATCCTTAGATTTGGTGAAAGAGGTTGATCAGTTGAATAGTGGTTTTGATAATGATAATAATATAGGTAGTAGCAGCATGGGGCTACAACCACCACATGCAAATCTTAGTGATGTTGATAAGGTGTTGCCCCAAGAGAATTTTGGAGGTTTCAATAATGTAAGTGATTTAGGGGTGTTTCCTCCAAGCAATTTTCGAGATCTCATTGGTGAAAATGACCTAGGGTCAGATGTGTTCTCTCTTAGTTATTTTGGAGGCCTCATTTGTGAGAGTGACTCAAGGTTAGGGGCATTTCGTCTAGAGATTTTTGGAGGGCTCATTGGTGAAAGTGATCACTTGGGGTCAGAGGTGTGGCCACCTCAAGGCAATTTTGGAGGTCTGAATGGTGAAAGTGACTCCAGGGTGTTACCGCAAGACAATTTTAGAGGTCTCAATGGTGAAAGTGATTTAGGAATGTTGCTTGAAGACAATATTGAAGGTCTCACTAGTGAAAGGGGTGATAGTTCACAGGTGTGGCCTGGAGGCAATTTTGGAGATCTCAATGATGGAAGTGATCTCTTAGAGATGTATAATTTTGAAGGTCTCAATGGTGAAAGTGGTGATAGTTCACAGGTGTTTCCTGAAGGCAATTTTGGAGATCTCAATGATGGAAGTTATCTCTTAAAGATGTTGTTTGAAGGTAATTTCGAAGGTCTCAATGGTGAAAGTAATTCAGGGCTTCTGAATGGAAGCTCTATTGATGAAATTGGAGGCAGTAACGTATGGCCATCTTATGGACATTTTGAAAGTACAATTGATGGAAGTTACATGGAAATAGAGCAACATAATGAAAATCAAGGAGGGTTCATTAACAACTCTGGAGCCAACACTCATGAAGCTGCCATGGGGAGATTCAATGCAAACTTTATTGGCAATAACAATGGAAATAACTTGAATTTTGGATTGCCTACTCATGGAAATTTTGCTAGTAGCGGTGAATTTGGAAGTGATACTCAAGTGCCTACATCATTTGGAGGAAAGTTTCCTTGA 1683 0.4017 METTKNTLPPPPPPPPPQTLPPPPPPPPQTKVNRVLRKRKVSLKLIENLKVRKRCYKRRTVGLLRKIEELSILCGIPTCLVISGPGDTKPKIWPSPEVAKQLLQRLEEVPKGVKSRKVVTQLSFMRDKTKKLENQLARLKERNNEKYMSILMHQIHHDGKSLSDFEPNDLKCLLGYVEQKLKKVRMRTKHFKQVLPLNPPPPPPPLSCPQENEVLEKQSSLDLVKEVDQLNSGFDNDNNIGSSSMGLQPPHANLSDVDKVLPQENFGGFNNVSDLGVFPPSNFRDLIGENDLGSDVFSLSYFGGLICESDSRLGAFRLEIFGGLIGESDHLGSEVWPPQGNFGGLNGESDSRVLPQDNFRGLNGESDLGMLLEDNIEGLTSERGDSSQVWPGGNFGDLNDGSDLLEMYNFEGLNGESGDSSQVFPEGNFGDLNDGSYLLKMLFEGNFEGLNGESNSGLLNGSSIDEIGGSNVWPSYGHFESTIDGSYMEIEQHNENQGGFINNSGANTHEAAMGRFNANFIGNNNGNNLNFGLPTHGNFASSGEFGSDTQVPTSFGGKFP. 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03654 560 SMART madsneu2 36 95 IPR002100 GO:0003677|GO:0046983
Seca2g03654 560 Gene3D - 50 134 IPR036879 GO:0003677|GO:0046983
Seca2g03654 560 MobiDBLite consensus disorder prediction 1 31 - -
Seca2g03654 560 PANTHER SERUM RESPONSE FACTOR HOMOLOG 39 239 - -
Seca2g03654 560 Coils Coil 122 149 - -
Seca2g03654 560 MobiDBLite consensus disorder prediction 1 32 - -
Seca2g03654 560 SUPERFAMILY SRF-like 38 130 IPR036879 GO:0003677|GO:0046983
Seca2g03654 560 ProSiteProfiles MADS-box domain profile. 36 82 IPR002100 GO:0003677|GO:0046983
Seca2g03654 560 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 46 86 IPR002100 GO:0003677|GO:0046983
Seca2g03654 560 CDD MADS_SRF_like 38 119 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03654 Seca-Chr2 113258857 113260539 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03654 36 204 Type I MADS-box Gene Family AT2G40210 32.544 9.62e-23 98.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca2g03654 SRF-TF 6.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03654 - - gmx:106798339 218.394