Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03653 ATGGAAACAACTAAAAACACCCTCCTCCCTCCTCTTCCTCCTCCTCCTCCTCAATCTCTTCCTCCTCCTCCTCAAACTAAAGTAAACAGAGTCCCAACAAAAAGGAAGGTGACTAAAAGGAAGGTGTCACTAAAACTGATTGAGAATTTGAAAGTAAGAAAATGTTGTTACAAAAAAAGAACTGTAGGGTTGTTAAGGAAGATGAAGGAGCTTTCCATACTTTGTGGTATCCCTACATGCTCAGTCATCTTTGGTCCAGGTGATACTGAGCCTAAAATATGGCCATCCCGTGCAGTTGCTAAACAACTACTACAAAGGCTTGAGGAAGTTCCAAAGGGTGTTAAGTCCAGAAAAGTGGTTACCCAATTGTCTTTTATGCGTGACAAGACAAAAAAGTTAGAAAATCAACTTGCCAGACTCAAGGAGAGGAACAATGAGAAAGATATGTCAGTTTTAATGCATCAAATCCATCATGATGGTAAGTCTTTATCTGATTTAGAGCCTAGTGATTTAAAGTGTTTACTTGACTATGTGGAGCAAAAACTGAACAAAGTTAGAATGAGAACCAAGCATTTTAAGCAGGTGTTACATCCTAATCCTCCTCCTCCACCACCAGTGTCTTGTCCTCAAGAGAATGAGGTCCTAGAGAAACAATCATCCTTAGATTTGGTGAAAGATATTGATCAGGTGAATAGTGGTTTTGATAATGATAATAATGTGGGTAGTAGCAGCATGGGGCTACCACAACCACATGAAAATCTTAGTGATGTTGATATGGTGTTTCCCCAAGATAATTTTAGAGGTTTCAATAATGTAAGTGATTTAGGGGTGTTTCCTCCAAGCAATTTTGGAGATCTCATTGGTGAAAGTGACCTAGGGTCAGAGGTGTTCTCTCTTAATGATTTTGGAGACCTCATTGGTGAGAGTGACTCAGGGTTAGGGTCATTTCCTCTGGAGAATTTTGGAAATCTCAATGGTGAAAGTGATCACTTGGGGTTAGAGGTGTTGCCTCCTCAAGGCAATTTTGAAGGTCTCAATGGTGAAAATGACTGTTGGTTGTTACCTCAAGGCAATTTTGAAGGTCTCAATGGTGAAAGTGACTCAAGGTTGTTACCTCAAGGCAATTTTGGAGGTCTCAATGGTGAAAGTGATGAAGGCAATTATGAAGGTCTCAATGTTGGAAGTGACTCGGGGGTGTTACCTCAAGGCAATTTTGGAGGTCTAAATGGTGAAAGTGATGAAGGCAATTATGAAGGTCTTAATGTTGGAAGTGACTCAGGGATGTTACCTCAAGACAATTTTGGTGGTCTCAATGGTGAAAGTGATTTAGGAATGTTGGTTGAAGACAATTTTGAAGGTCTCAATGGTGAAAGGGGTGATAGTTCACAGCTGTGGCCTGAAGGAAATTATGGAGATCTCAATGATGGAAGTGATCACTTAAAGATGTACCTTGAAGGTAATTTTGAAGGTCTCAACGGTGAAAGTAATTCAGGGATTCTGAATGGAAGCTCTACTGATGAAATTGGAGGCAGTAACATATGGCCATCTTATGGACATTTTCAAAGTACAATTGGTGGAAGTTACATGGAAATAGAGCAGCATAATGAAAATCAAGGATGGTCCATTAACAACACAGGGCTAATTTGTGGTCATCAAAACAACTCTGGAGCCAACACTAATGAAGCTGCTATGGGGAGATTCGATGTAAAATTTGTTGGCAATTATAATGGAAATAACTTGAATTTTGGATTGCCTACTCATGGAATTTTTGCTAGTAGTGGTGAATTTGGAAGTGATACTCAAGTGCCTACATCATTTGGAGGAAATGTTCCTTGA 1836 0.3976 METTKNTLLPPLPPPPPQSLPPPPQTKVNRVPTKRKVTKRKVSLKLIENLKVRKCCYKKRTVGLLRKMKELSILCGIPTCSVIFGPGDTEPKIWPSRAVAKQLLQRLEEVPKGVKSRKVVTQLSFMRDKTKKLENQLARLKERNNEKDMSVLMHQIHHDGKSLSDLEPSDLKCLLDYVEQKLNKVRMRTKHFKQVLHPNPPPPPPVSCPQENEVLEKQSSLDLVKDIDQVNSGFDNDNNVGSSSMGLPQPHENLSDVDMVFPQDNFRGFNNVSDLGVFPPSNFGDLIGESDLGSEVFSLNDFGDLIGESDSGLGSFPLENFGNLNGESDHLGLEVLPPQGNFEGLNGENDCWLLPQGNFEGLNGESDSRLLPQGNFGGLNGESDEGNYEGLNVGSDSGVLPQGNFGGLNGESDEGNYEGLNVGSDSGMLPQDNFGGLNGESDLGMLVEDNFEGLNGERGDSSQLWPEGNYGDLNDGSDHLKMYLEGNFEGLNGESNSGILNGSSTDEIGGSNIWPSYGHFQSTIGGSYMEIEQHNENQGWSINNTGLICGHQNNSGANTNEAAMGRFDVKFVGNYNGNNLNFGLPTHGIFASSGEFGSDTQVPTSFGGNVP. 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03653 611 CDD MADS_SRF_like 38 120 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca2g03653 611 PRINTS MADS domain signature 39 59 IPR002100 GO:0003677|GO:0046983
Seca2g03653 611 PRINTS MADS domain signature 59 74 IPR002100 GO:0003677|GO:0046983
Seca2g03653 611 Gene3D - 51 156 IPR036879 GO:0003677|GO:0046983
Seca2g03653 611 MobiDBLite consensus disorder prediction 8 28 - -
Seca2g03653 611 SUPERFAMILY SRF-like 39 131 IPR036879 GO:0003677|GO:0046983
Seca2g03653 611 MobiDBLite consensus disorder prediction 402 437 - -
Seca2g03653 611 SMART madsneu2 37 96 IPR002100 GO:0003677|GO:0046983
Seca2g03653 611 ProSiteProfiles MADS-box domain profile. 37 85 IPR002100 GO:0003677|GO:0046983
Seca2g03653 611 MobiDBLite consensus disorder prediction 1 35 - -
Seca2g03653 611 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 47 87 IPR002100 GO:0003677|GO:0046983
Seca2g03653 611 Coils Coil 123 150 - -
Seca2g03653 611 PANTHER SERUM RESPONSE FACTOR HOMOLOG 40 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03653 Seca-Chr2 113180027 113181862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03653 40 180 MADS-box Gene Family AT5G26650 33.557 1.35e-22 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca2g03653 SRF-TF 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03653 - - mtr:120579700 218.394