Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03652 ATGGCCAACTCAATTGATTCCTCTGGATTCCTTGGCTCTGTCAGCATCAGTGGCTATGCCAAGCTCAACAAGTTTGATTCCACTACAACATGTTGCTCCATATGTCTGGCAGAATACAAAGGTACTAATATGATTCGGGCACTACCAGATTGTGGTCATCAAATCCACCCCAACTGTATAGATCCATGGTTGAGACTTCATCCTATATGTCCAGTTTTTAGAACATCTCCATTGCCAACACCACTCTCAACTCCTCTGGCTGAGGTGGTTCCATTAGCAACCACATAG 288 0.4444 MANSIDSSGFLGSVSISGYAKLNKFDSTTTCCSICLAEYKGTNMIRALPDCGHQIHPNCIDPWLRLHPICPVFRTSPLPTPLSTPLAEVVPLATT. 96
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03652 95 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 78 IPR013083 -
Seca2g03652 95 Pfam Ring finger domain 32 72 IPR001841 -
Seca2g03652 95 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 21 88 IPR045899 -
Seca2g03652 95 SUPERFAMILY RING/U-box 28 74 - -
Seca2g03652 95 ProSiteProfiles Zinc finger RING-type profile. 32 74 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03652 Seca-Chr2 113156227 113156711 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03652 22 93 C3H Transcription Factor Family AT5G06490 68.056 1.44e-32 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03652 - - gmx:100811799 129.028