Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03647 ATGAGTTCACAGCATTTCAACAATGGTGGTGGTGGTGAAGGTTTCAGTGGAGACATGAGTCTTTTCCCTTCACCTCATGTTCCTTCTTCTCTTTTTGTGGGTTCTCAAGTTCCTCTTTTATGCAAGACTATAGGGGTTGTGGATCATGTTAATGGGGTAGAGGGTTGGAAGCATGAGATAGGACTTCAGATTTTGAGCCCCTCAATGTTCCAGTCTCAAGAGAACAGAGGAACAAAGAAAACCAATGATGGAGAAGATGGGTACTTTGGGGTTGAGAACAATAATTTGTCTTTGAAACTTGGGGATGAAGTTGAAGCTAAGAGCTCTGCTTCAGGGATAATTGGATACACTAAGCTCTGTGCTAGGGGACACTGGAGGCCAGCTGAAGATGCACAACTTAAGGAGCTTGTTACTCAATATGGTCCTCAAAATTGGAACTTGATTGCAGAGCATCTTCAAGGAAGATCAGGCAAAAGTTGCAGATTGAGGTGGTTCAATCAGCTAGACCCTAGAATCAACAAAAGGGCATTTTCTGAGGAGGAAGAGGAGAGGCTCTTAGCTGCTCATAAAATGTATGGTAACAAATGGGCTATAATTGCTAGACTCTTTCCTGGAAGGACAGATAATGCAGTGAAGAATCATTGGCATGTGATCATGGCTAGAAGGCACAGGGAGCAATCTAGTGTGTATAGAAGGAGAAAACCCACAGTTGGAAGCCTTCCAAAAGGTTTAAAATTGACTCTCTCAAACAATGCAGCCAGTGAATCAACTATCTCAAGCACCATAGATGAATCTGCCTCAACTTGCACTAACCTCTCCCTCACTCCCTCTTCAGCCAAACCAACTATTAGACCTTTTGATAAACTGGGTCCAGTTCAGAATCACCAAGGCTATGAATCACAAATGGGTCAATCTAGAGAAAATGAGGTGGTAACTGGGGATGTGAGTTTTGATAATCTTCTTGGAGGTTGGAACAACACATGTAACCTTGAAGCTGTGGCAAAAGTCATGGATGTGGAGCAGTCTAATTTTTCAGATTCAAACTCAGAAGTTTCAGTATCTGAATCAGTTTGCACCAATAGGTCCAGTTTCTCAATTTCTGGGGAAAGTGAAAAAGTGGGTTATAAGATTATTAACATGTCATTCATTGATTTTCTTGGAGTAGGAGCTACATAG 1176 0.4192 MSSQHFNNGGGGEGFSGDMSLFPSPHVPSSLFVGSQVPLLCKTIGVVDHVNGVEGWKHEIGLQILSPSMFQSQENRGTKKTNDGEDGYFGVENNNLSLKLGDEVEAKSSASGIIGYTKLCARGHWRPAEDAQLKELVTQYGPQNWNLIAEHLQGRSGKSCRLRWFNQLDPRINKRAFSEEEEERLLAAHKMYGNKWAIIARLFPGRTDNAVKNHWHVIMARRHREQSSVYRRRKPTVGSLPKGLKLTLSNNAASESTISSTIDESASTCTNLSLTPSSAKPTIRPFDKLGPVQNHQGYESQMGQSRENEVVTGDVSFDNLLGGWNNTCNLEAVAKVMDVEQSNFSDSNSEVSVSESVCTNRSSFSISGESEKVGYKIINMSFIDFLGVGAT. 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03647 391 MobiDBLite consensus disorder prediction 1 20 - -
Seca2g03647 391 ProSiteProfiles Myb-like domain profile. 169 219 IPR001005 -
Seca2g03647 391 Gene3D - 122 173 - -
Seca2g03647 391 Pfam Myb-like DNA-binding domain 122 168 IPR001005 -
Seca2g03647 391 Pfam Myb-like DNA-binding domain 174 217 IPR001005 -
Seca2g03647 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 169 223 IPR017930 -
Seca2g03647 391 SMART sant 173 221 IPR001005 -
Seca2g03647 391 SMART sant 121 170 IPR001005 -
Seca2g03647 391 FunFam MYB transcription factor 175 243 - -
Seca2g03647 391 Gene3D - 175 237 - -
Seca2g03647 391 PANTHER MYB PROTEIN-RELATED 122 270 - -
Seca2g03647 391 CDD SANT 125 166 IPR001005 -
Seca2g03647 391 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 122 168 IPR017930 -
Seca2g03647 391 SUPERFAMILY Homeodomain-like 122 215 IPR009057 -
Seca2g03647 391 CDD SANT 185 216 IPR001005 -
Seca2g03647 391 FunFam MYB transcription factor 122 173 - -
Seca2g03647 391 ProSiteProfiles Myb-like domain profile. 122 168 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03647 Seca-Chr2 113007313 113009946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03647 121 241 MYB Transcription Factor Family AT1G69560 81.818 5.65e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g03647 Myb_DNA-binding 4.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03647 K09422 - gmx:100791795 443.736