Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03645 ATGGAAGATCATGACCCCAATAGTCCAAGGCAAGGCTCCGAGAAAAGTGAACCAGTTAGGTCAAGGTGGACTCCAAAGCCAGAACAAATCCTCATACTTGAGTCCATCTTCAACAGTGGCATGGTCAATCCCCCAAAAGATGAAACCGTCAGAATAAGAAAACTCCTTGAGAAATTCGGCACCGTCGGTGATGCCAACGTCTTCTATTGGTTCCAAAACCGCCGCTCCAGATCTCGCCGCCGCCAACGCCAGCTCCAACAACAACAACAAGCCACCCTTAATCAACAAAGAAACCACCAACCACCACCACCACCACCTCATCATCATCATCAAGTTGTTGAGAATGGTGCAATAGCAAGTGCAATTTCTTATGATCAAACTCAAACCACCCCTTCTGTAGGAGCTATGAATATGGGTTTTGTCTCTTCCTCTTCTTATAATTTCCCTCATGGTTCCTCTTCTTCATCATGTGGTGTTGTTCAACAAGGAGGCATGGATGGTTTCTTTTCAGTTTCTTCTCAAATGGGTTACCCTGGAATTGATCACACCTCAGCCGCATCATCATCATCATCAGTTTTGTACCCTCCTCTTGCTCCCAATTTGAACTACCACTCTGGATATGGGGGTGCTAATGCTTCAGCCTTCATCACTGTGTTTATCAATGGGATTGCAACAGAACTTCAAGGGGGGCCAATAGACATCAAAACAGTGTTTGGAGAAGATGTAATGTTAGTTCATTCCTCTGGAGTTCCTGTTCCCACAAATGAATTTGGGTTCTTGATGCAGAGCTTGCAGCATGGTGAAAGCTACTTTCTGGTATCAAAGGCAACACAGGTAGCCTAG 843 0.4531 MEDHDPNSPRQGSEKSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQRQLQQQQQATLNQQRNHQPPPPPPHHHHQVVENGAIASAISYDQTQTTPSVGAMNMGFVSSSSYNFPHGSSSSSCGVVQQGGMDGFFSVSSQMGYPGIDHTSAASSSSSVLYPPLAPNLNYHSGYGGANASAFITVFINGIATELQGGPIDIKTVFGEDVMLVHSSGVPVPTNEFGFLMQSLQHGESYFLVSKATQVA. 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03645 280 SMART HOX_1 18 85 IPR001356 GO:0003677
Seca2g03645 280 ProSiteProfiles 'Homeobox' domain profile. 16 81 IPR001356 GO:0003677
Seca2g03645 280 PANTHER WUSCHEL-RELATED HOMEOBOX 11 3 276 IPR044558 GO:0003700|GO:0048830
Seca2g03645 280 MobiDBLite consensus disorder prediction 1 22 - -
Seca2g03645 280 Gene3D - 4 97 - -
Seca2g03645 280 MobiDBLite consensus disorder prediction 83 97 - -
Seca2g03645 280 SUPERFAMILY Homeodomain-like 14 86 IPR009057 -
Seca2g03645 280 Pfam Homeodomain 20 80 IPR001356 GO:0003677
Seca2g03645 280 FunFam WUSCHEL-related homeobox 11 20 87 - -
Seca2g03645 280 MobiDBLite consensus disorder prediction 1 25 - -
Seca2g03645 280 MobiDBLite consensus disorder prediction 76 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03645 Seca-Chr2 112952456 112954282 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03645 6 279 Wox Gene Family AT3G03660 45.714 3.96e-66 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca2g03645 Homeodomain 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03645 - - gmx:100791266 297.36