Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g03615 ATGCAAAGTGTGAATAAAAATGTGATCATCAAGGATTCTTGGAGGTTGAGAGTTAGGGTGGTGCGCCTATGGGAAATGTGTTCAATTGTTGATCCAACCAAGCCATTTGCAATAGACATGGTGTTGATGGATGTTGAGGGTGGTAGAATCCAGGCAACAATTCGGAAGCCAATGATGAAGATGTTTAGCAACTTAATTGCTGAGGGTGAGGTCTACTCAATGATGTCGTTTGCTATGATAAAGAATGTTGGTTGTTACCGTGCATCCAGGCATGAATACAAACTATTGTTCAGTGCTAAGACAAAGGTCTATCAATCACAGTCTACTGTTATACCGTTGGTTGGATTATCCCTCATGAGCACTGAGGAGATTTCAAAGACAAATGGAGAGTTCAATTACCTTTTTGATCTTATGGGTGTGTTGACTGTTGTTTCTACTGAAAAAGAGGTAGAAACAGATGGGAGGAAGACTAGGATGATGGAAATGGAGCTTGCTGATGACAAAGGGAGAATGAGGTGCACTGTTTTTGGAAACTATGTTGACACATTAAAAGACTTTGTTGCCTCTAGCGTCACTCCACTCCCTGTTGTTGTTGCACAACTATTCAAAGTTAGATTATATAAAGGAAACGTAGTGTTGCAGAATGTGAATAACACATCCAGGATTTTGTGGAATCCGGACATTGCTGAGGCCACTGAATTTAGAAATAGCTTGGCTTGCCATGGATTTGATACTGAAGATGAGATGGGTGTCATAGAGGGGGGCAATCGTGTTGTTCCCCTATCTGATGAATTCTTGAGAATGTATCCAAGGAAGACTGTGAATGAATTACAAATAACTGAGGAGGAAGAGCAGTGGTGGTATGGGGCTTGCAAGTGCCACAAGGCAGTGACCCCTGATGGTGGTTTGTACTATTGTTCTAATTGCGCAACTCATGTTGTTGAAGTTACACCCGGGTCGAGGTTTTTCCACTGGGATGATTCTGCTTCTTTTATACTCTTTGATTCGGACTATGTTAATCTTATTGGGAAGAGTTGTAAGCAATTGGTTGAAGAGTCCAAGGGTTTAAAAGCAGGTGAGCACCCACCTGATTTCATGGGGTTGATTGGAAAGGCACTGCTGTTCAAGGTTGAGAAAACTGTTGATTATGCTTTCAGCTATGATGATTCATTCAGAGTTAAAAAGGCTAATGGCAATGTACCCATAAGTTCTGTTGTTTTCACCGATGGCTCATCAAGTTTTAGTGTGCAATGCTCCAATCCAAGTGGCCATAGTGTGCAGACTTCCATTCCCAGTAGCTCCAGTGTGAATTGTTCCAATCCAAGTGTTAATGATGAGCATGATGAAGACACTCCACTGTCATTTAAGCGTCTCCGTAGCAGGGTTGTGAAACTGGATGAAGACTAG 1407 0.4193 MQSVNKNVIIKDSWRLRVRVVRLWEMCSIVDPTKPFAIDMVLMDVEGGRIQATIRKPMMKMFSNLIAEGEVYSMMSFAMIKNVGCYRASRHEYKLLFSAKTKVYQSQSTVIPLVGLSLMSTEEISKTNGEFNYLFDLMGVLTVVSTEKEVETDGRKTRMMEMELADDKGRMRCTVFGNYVDTLKDFVASSVTPLPVVVAQLFKVRLYKGNVVLQNVNNTSRILWNPDIAEATEFRNSLACHGFDTEDEMGVIEGGNRVVPLSDEFLRMYPRKTVNELQITEEEEQWWYGACKCHKAVTPDGGLYYCSNCATHVVEVTPGSRFFHWDDSASFILFDSDYVNLIGKSCKQLVEESKGLKAGEHPPDFMGLIGKALLFKVEKTVDYAFSYDDSFRVKKANGNVPISSVVFTDGSSSFSVQCSNPSGHSVQTSIPSSSSVNCSNPSVNDEHDEDTPLSFKRLRSRVVKLDED. 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g03615 468 PANTHER OS03G0429900 PROTEIN 279 448 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca2g03615 468 MobiDBLite consensus disorder prediction 425 451 - -
Seca2g03615 468 Pfam Domain of unknown function DUF223 40 110 IPR003871 -
Seca2g03615 468 Gene3D - 268 397 IPR012340 -
Seca2g03615 468 CDD RPA1_DBD_A_like 15 103 - -
Seca2g03615 468 Gene3D - 4 105 IPR012340 -
Seca2g03615 468 SUPERFAMILY Nucleic acid-binding proteins 11 106 IPR012340 -
Seca2g03615 468 CDD RPA1_DBD_B_like 136 238 - -
Seca2g03615 468 SUPERFAMILY Nucleic acid-binding proteins 283 383 IPR012340 -
Seca2g03615 468 Gene3D - 110 245 IPR012340 -
Seca2g03615 468 MobiDBLite consensus disorder prediction 425 442 - -
Seca2g03615 468 SUPERFAMILY Nucleic acid-binding proteins 117 243 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g03615 Seca-Chr2 111824521 111827134 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g03615 14 315 Core DNA Replication Machinery Family AT4G19130 21.687 3.16e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g03615 - - lja:Lj6g3v0884310.1 334.339